Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL391684.1-202ENST00000641293 1636 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 AL049641.1-201ENST00000441055 1948 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC3.87□□□□□ -1.79
HOXA3O43365 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA3O43365 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 AC010300.1-201ENST00000600671 5134 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 Y_RNA.5-201ENST00000362334 102 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 SNORD3E-201ENST00000362899 217 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RNU6-1040P-201ENST00000383974 107 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 SNORA75B-201ENST00000384053 137 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RNU6-629P-201ENST00000384061 103 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RNU6-1050P-201ENST00000410388 107 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 E2F6P2-201ENST00000420708 748 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 AC079780.1-201ENST00000428259 207 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA3O43365 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 HIGD1AP11-201ENST00000438361 280 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 AP000942.1-201ENST00000463969 747 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RPL23AP2-201ENST00000471227 466 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC021146.2-201ENST00000504736 556 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC026782.1-201ENST00000512952 449 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RNU1-54P-201ENST00000517181 120 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC087854.1-201ENST00000519706 414 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA3O43365 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA3O43365 RN7SL652P-201ENST00000577769 300 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RN7SL690P-201ENST00000582087 240 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AL354984.3-201ENST00000604803 325 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC007938.3-201ENST00000604965 623 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AL022401.1-201ENST00000619498 108 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC091925.1-201ENST00000623204 462 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC092608.2-201ENST00000624427 218 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 AC000123.3-201ENST00000624029 4975 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
HOXA3O43365 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
HOXA3O43365 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXA3O43365 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 AP001486.2-201ENST00000561652 5113 ntBASIC3.87□□□□□ -1.79
HOXA3O43365 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA3O43365 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA3O43365 MTND4P1-201ENST00000457501 1466 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA3O43365 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC3.86□□□□□ -1.79
HOXA3O43365 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 Y_RNA.473-201ENST00000384333 102 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RNU6-95P-201ENST00000384697 107 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RNU6-328P-201ENST00000390887 106 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RPL21P90-201ENST00000415692 466 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA3O43365 AC104333.2-201ENST00000422630 192 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA3O43365 AL359672.1-201ENST00000442302 409 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA3O43365 AL035666.1-201ENST00000446195 348 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA3O43365 MTND5P22-201ENST00000458380 195 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 FTH1P2-201ENST00000466086 412 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 HSPE1P6-201ENST00000479457 291 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA3O43365 AC026801.1-201ENST00000497178 464 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA3O43365 SCARNA22-201ENST00000503991 125 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA3O43365 AC021146.3-201ENST00000511911 260 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 PTP4A1P4-201ENST00000512479 322 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RNU6-914P-201ENST00000516749 109 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 Y_RNA.708-201ENST00000516950 96 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RNU6-1137P-201ENST00000517073 99 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 RN7SKP295-201ENST00000517264 153 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC009643.1-201ENST00000532030 391 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC027369.5-201ENST00000533838 755 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXA3O43365 AL355836.1-201ENST00000555951 870 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA3O43365 SNORA74C-1-201ENST00000580726 201 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AL121932.1-201ENST00000605542 214 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC002044.1-201ENST00000606707 158 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AC009229.3-201ENST00000608056 282 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 AL078596.1-201ENST00000624856 447 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms