Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC8.95□□□□□ -0.98
MSH5O43196 AC007159.1-201ENST00000566529 4706 ntBASIC8.95□□□□□ -0.98
MSH5O43196 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 FAP-203ENST00000443424 2598 ntTSL 2 BASIC8.95□□□□□ -0.98
MSH5O43196 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 RNU6-339P-201ENST00000384310 107 ntBASIC8.95□□□□□ -0.98
MSH5O43196 Y_RNA.531-201ENST00000384589 121 ntBASIC8.95□□□□□ -0.98
MSH5O43196 FTH1P15-201ENST00000406984 280 ntBASIC8.95□□□□□ -0.98
MSH5O43196 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC8.95□□□□□ -0.98
MSH5O43196 RPS12P18-201ENST00000442381 270 ntBASIC8.95□□□□□ -0.98
MSH5O43196 EEF1B2P6-201ENST00000445713 673 ntBASIC8.95□□□□□ -0.98
MSH5O43196 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC8.95□□□□□ -0.98
MSH5O43196 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC8.95□□□□□ -0.98
MSH5O43196 AC016632.1-201ENST00000503994 196 ntBASIC8.95□□□□□ -0.98
MSH5O43196 AC007751.1-201ENST00000529260 376 ntBASIC8.95□□□□□ -0.98
MSH5O43196 HMGN2P47-201ENST00000559378 272 ntBASIC8.95□□□□□ -0.98
MSH5O43196 MIR4301-201ENST00000577203 66 ntBASIC8.95□□□□□ -0.98
MSH5O43196 AC107294.3-201ENST00000609211 526 ntBASIC8.95□□□□□ -0.98
MSH5O43196 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC8.95□□□□□ -0.98
MSH5O43196 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
MSH5O43196 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC8.95□□□□□ -0.98
MSH5O43196 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC8.94□□□□□ -0.98
MSH5O43196 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 CROT-204ENST00000442291 1993 ntTSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC8.94□□□□□ -0.98
MSH5O43196 AC008163.1-202ENST00000636004 2889 ntBASIC8.94□□□□□ -0.98
MSH5O43196 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 RNU6-529P-201ENST00000363383 104 ntBASIC8.94□□□□□ -0.98
MSH5O43196 BX510359.2-201ENST00000417920 305 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AL078601.1-201ENST00000444542 271 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 RNU6-572P-201ENST00000516724 80 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 MIR3129-201ENST00000581095 76 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AC005332.4-201ENST00000592752 579 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AL020997.2-201ENST00000602607 184 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AL356157.2-201ENST00000605122 111 ntBASIC8.94□□□□□ -0.98
MSH5O43196 AC004241.2-201ENST00000614562 444 ntBASIC8.94□□□□□ -0.98
MSH5O43196 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
MSH5O43196 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
MSH5O43196 AL136531.3-201ENST00000624378 3658 ntBASIC8.93□□□□□ -0.98
MSH5O43196 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC8.93□□□□□ -0.98
MSH5O43196 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC8.93□□□□□ -0.98
MSH5O43196 PPIAP22-201ENST00000358455 498 ntBASIC8.93□□□□□ -0.98
MSH5O43196 Y_RNA.361-201ENST00000365515 120 ntBASIC8.93□□□□□ -0.98
MSH5O43196 AC006517.1-201ENST00000480485 328 ntBASIC8.93□□□□□ -0.98
MSH5O43196 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
MSH5O43196 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
MSH5O43196 AC015801.1-201ENST00000585651 153 ntBASIC8.93□□□□□ -0.98
MSH5O43196 RPL29P33-201ENST00000587474 316 ntBASIC8.93□□□□□ -0.98
MSH5O43196 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC8.93□□□□□ -0.98
MSH5O43196 AC007256.1-201ENST00000392253 2765 ntBASIC8.93□□□□□ -0.98
MSH5O43196 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC8.93□□□□□ -0.98
MSH5O43196 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC8.93□□□□□ -0.98
MSH5O43196 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
MSH5O43196 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
MSH5O43196 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC8.92□□□□□ -0.98
MSH5O43196 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC8.92□□□□□ -0.98
MSH5O43196 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 RNU6-887P-201ENST00000410660 100 ntBASIC8.92□□□□□ -0.98
MSH5O43196 AC108161.1-201ENST00000461060 402 ntBASIC8.92□□□□□ -0.98
MSH5O43196 AC007215.1-201ENST00000464893 276 ntBASIC8.92□□□□□ -0.98
MSH5O43196 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC8.92□□□□□ -0.98
MSH5O43196 TNPO1P2-201ENST00000426249 2665 ntBASIC8.92□□□□□ -0.98
MSH5O43196 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
MSH5O43196 MR1-209ENST00000617803 7584 ntTSL 5 BASIC8.92□□□□□ -0.98
MSH5O43196 AC018630.2-201ENST00000534866 2403 ntBASIC8.92□□□□□ -0.98
MSH5O43196 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC8.92□□□□□ -0.98
MSH5O43196 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC8.92□□□□□ -0.98
MSH5O43196 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
MSH5O43196 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
MSH5O43196 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC8.91□□□□□ -0.98
MSH5O43196 CPS1-IT1-201ENST00000628368 2306 ntBASIC8.91□□□□□ -0.98
MSH5O43196 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
MSH5O43196 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC8.91□□□□□ -0.98
MSH5O43196 AL645939.1-201ENST00000453429 797 ntBASIC8.91□□□□□ -0.98
MSH5O43196 RPL7AP23-201ENST00000482625 776 ntBASIC8.91□□□□□ -0.98
MSH5O43196 RN7SL214P-201ENST00000487317 265 ntBASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms