Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC011471.1-201ENST00000585766 187 ntBASIC2.53□□□□□ -2
LSM1O15116 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.53□□□□□ -2
LSM1O15116 AC012468.1-201ENST00000604888 430 ntBASIC2.53□□□□□ -2
LSM1O15116 AL442067.2-201ENST00000614033 363 ntBASIC2.53□□□□□ -2
LSM1O15116 AC008443.7-201ENST00000622195 246 ntBASIC2.53□□□□□ -2
LSM1O15116 MIR4275-201ENST00000636486 87 ntBASIC2.53□□□□□ -2
LSM1O15116 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LSM1O15116 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 RNU6-461P-201ENST00000364195 107 ntBASIC2.52□□□□□ -2.01
LSM1O15116 RNU6-1257P-201ENST00000384625 110 ntBASIC2.52□□□□□ -2.01
LSM1O15116 SNORA40.2-201ENST00000390847 128 ntBASIC2.52□□□□□ -2.01
LSM1O15116 TPMTP3-201ENST00000411928 735 ntBASIC2.52□□□□□ -2.01
LSM1O15116 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC091390.3-201ENST00000426478 338 ntBASIC2.52□□□□□ -2.01
LSM1O15116 MTND4P6-201ENST00000438297 472 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AL049734.2-201ENST00000441066 616 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC011816.1-201ENST00000441346 546 ntBASIC2.52□□□□□ -2.01
LSM1O15116 NANOGNBP1-201ENST00000448444 480 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.52□□□□□ -2.01
LSM1O15116 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.52□□□□□ -2.01
LSM1O15116 RPS27P27-201ENST00000498779 255 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC026427.2-201ENST00000506228 536 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC107222.1-201ENST00000510899 637 ntBASIC2.52□□□□□ -2.01
LSM1O15116 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 SNORA70.24-201ENST00000517233 118 ntBASIC2.52□□□□□ -2.01
LSM1O15116 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.52□□□□□ -2.01
LSM1O15116 AP003497.1-201ENST00000528472 562 ntBASIC2.52□□□□□ -2.01
LSM1O15116 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.52□□□□□ -2.01
LSM1O15116 AC005951.2-201ENST00000576282 495 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AL353997.4-201ENST00000586196 166 ntBASIC2.52□□□□□ -2.01
LSM1O15116 NRBF2P5-201ENST00000603087 788 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.52□□□□□ -2.01
LSM1O15116 AC079395.3-201ENST00000615161 484 ntBASIC2.52□□□□□ -2.01
LSM1O15116 AC126544.2-201ENST00000625174 749 ntBASIC2.52□□□□□ -2.01
LSM1O15116 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LSM1O15116 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LSM1O15116 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
LSM1O15116 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LSM1O15116 RNU6-741P-201ENST00000383889 107 ntBASIC2.51□□□□□ -2.01
LSM1O15116 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
LSM1O15116 AL109755.1-201ENST00000401791 649 ntBASIC2.51□□□□□ -2.01
LSM1O15116 AL356057.3-201ENST00000402607 340 ntBASIC2.51□□□□□ -2.01
LSM1O15116 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.51□□□□□ -2.01
LSM1O15116 AL358075.3-201ENST00000426289 226 ntBASIC2.51□□□□□ -2.01
LSM1O15116 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.51□□□□□ -2.01
LSM1O15116 TRBV26OR9-2-201ENST00000432077 293 ntBASIC2.51□□□□□ -2.01
LSM1O15116 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.51□□□□□ -2.01
LSM1O15116 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.51□□□□□ -2.01
LSM1O15116 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.51□□□□□ -2.01
LSM1O15116 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.51□□□□□ -2.01
LSM1O15116 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.51□□□□□ -2.01
LSM1O15116 SRIP1-201ENST00000489235 288 ntBASIC2.51□□□□□ -2.01
LSM1O15116 AC008427.1-201ENST00000503102 655 ntBASIC2.51□□□□□ -2.01
LSM1O15116 MRPS36P2-201ENST00000512569 299 ntBASIC2.51□□□□□ -2.01
LSM1O15116 COX6CP5-201ENST00000527162 228 ntBASIC2.51□□□□□ -2.01
LSM1O15116 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.51□□□□□ -2.01
LSM1O15116 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.51□□□□□ -2.01
LSM1O15116 MIR3117-201ENST00000584034 78 ntBASIC2.51□□□□□ -2.01
LSM1O15116 AL161729.4-201ENST00000604650 476 ntBASIC2.51□□□□□ -2.01
LSM1O15116 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.51□□□□□ -2.01
LSM1O15116 AC013476.2-201ENST00000614456 459 ntBASIC2.51□□□□□ -2.01
LSM1O15116 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
LSM1O15116 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LSM1O15116 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LSM1O15116 MIR9-1-201ENST00000385198 89 ntBASIC2.5□□□□□ -2.01
LSM1O15116 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
LSM1O15116 AL122016.1-201ENST00000403365 367 ntBASIC2.5□□□□□ -2.01
LSM1O15116 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.5□□□□□ -2.01
LSM1O15116 OR4K6P-201ENST00000416478 897 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.5□□□□□ -2.01
LSM1O15116 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LSM1O15116 PTP4A1P7-201ENST00000423476 514 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC008850.1-201ENST00000427546 362 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC006946.1-201ENST00000429106 328 ntBASIC2.5□□□□□ -2.01
LSM1O15116 UBE2V1P13-201ENST00000436983 439 ntBASIC2.5□□□□□ -2.01
LSM1O15116 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
LSM1O15116 AL445687.1-201ENST00000439946 251 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LSM1O15116 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LSM1O15116 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.5□□□□□ -2.01
LSM1O15116 RPS15AP27-201ENST00000449183 343 ntBASIC2.5□□□□□ -2.01
LSM1O15116 ATG12P2-201ENST00000456830 416 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AP1S2P1-201ENST00000457344 379 ntBASIC2.5□□□□□ -2.01
LSM1O15116 snoU13.22-201ENST00000459428 104 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC108734.3-201ENST00000481241 1165 ntBASIC2.5□□□□□ -2.01
LSM1O15116 SUMO2P6-201ENST00000505273 288 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC093752.1-206ENST00000511823 336 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.5□□□□□ -2.01
LSM1O15116 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.5□□□□□ -2.01
LSM1O15116 RNA5SP282-201ENST00000516355 108 ntBASIC2.5□□□□□ -2.01
LSM1O15116 NRON-201ENST00000517270 370 ntBASIC2.5□□□□□ -2.01
LSM1O15116 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms