Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 FAM106DP-201ENST00000586416 501 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AL161734.1-201ENST00000609720 557 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC068831.7-201ENST00000616954 363 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC013268.2-201ENST00000420753 337 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 KATNBL1P3-201ENST00000443475 909 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC107398.1-201ENST00000486904 505 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC093801.2-201ENST00000503966 1050 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 RNU4-60P-201ENST00000517239 135 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC087373.1-201ENST00000524920 491 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 RNU6-1077P-201ENST00000410506 102 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 MTCYBP7-201ENST00000419540 1134 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 ATP5J2P3-201ENST00000451550 258 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 RPL7P18-201ENST00000478965 734 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 RNU6-1223P-201ENST00000517124 104 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 SNORA31.23-201ENST00000517219 133 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC135279.1-201ENST00000543493 504 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 AC090897.2-201ENST00000581715 130 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 MIR6788-201ENST00000618842 66 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.07□□□□□ -2.08
CCDC88BA6NC98 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88BA6NC98 SNORA7.2-201ENST00000364446 145 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 SNORA6-201ENST00000384033 151 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 RPL35AP22-201ENST00000436855 335 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC017099.1-201ENST00000448261 1028 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 RBM43P1-201ENST00000476891 1081 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC092991.1-201ENST00000477176 376 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 NCOR1P1-202ENST00000486162 291 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AP005660.1-201ENST00000522972 293 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC090821.2-201ENST00000523552 176 ntBASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88BA6NC98 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC88BA6NC98 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC88BA6NC98 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC88BA6NC98 RPL7P27-201ENST00000403775 720 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88BA6NC98 RN7SKP265-201ENST00000516448 223 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 NBEAP1-201ENST00000554452 979 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 AL133507.1-201ENST00000605269 557 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 AC008962.1-201ENST00000605729 304 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 AC025016.1-201ENST00000616746 682 ntBASIC2.05□□□□□ -2.08
CCDC88BA6NC98 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC88BA6NC98 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.04□□□□□ -2.08
CCDC88BA6NC98 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC88BA6NC98 RNU6-799P-201ENST00000363567 107 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 RNU6-342P-201ENST00000384521 104 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 MTND4LP16-201ENST00000440828 295 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC88BA6NC98 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC88BA6NC98 GLUD1P4-201ENST00000590914 418 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 AC002487.1-201ENST00000604565 994 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 AC008083.4-201ENST00000615076 444 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 AC021755.4-201ENST00000616620 456 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 MIR6515-201ENST00000619843 57 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 AC079597.1-201ENST00000624306 508 ntBASIC2.04□□□□□ -2.08
CCDC88BA6NC98 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC88BA6NC98 MIR373-201ENST00000362273 69 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 RPL26P37-201ENST00000411983 438 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 Z75741.2-201ENST00000417272 1167 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AL121871.1-201ENST00000443413 436 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC88BA6NC98 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AC093852.1-201ENST00000503587 266 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AC010627.1-201ENST00000503819 1294 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AC022079.2-201ENST00000619739 566 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AL359851.1-201ENST00000569460 4997 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 AC135776.4-201ENST00000624300 1904 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 CDC27P3-201ENST00000635418 1910 ntBASIC2.03□□□□□ -2.08
CCDC88BA6NC98 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
CCDC88BA6NC98 ZNF33CP-201ENST00000432492 2030 ntBASIC2.02□□□□□ -2.09
CCDC88BA6NC98 RNU4-91P-201ENST00000364778 135 ntBASIC2.02□□□□□ -2.09
CCDC88BA6NC98 MIR548J-201ENST00000408833 112 ntBASIC2.02□□□□□ -2.09
CCDC88BA6NC98 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 AC146507.1-201ENST00000468335 354 ntBASIC2.02□□□□□ -2.09
CCDC88BA6NC98 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 AC092902.1-201ENST00000486999 259 ntBASIC2.02□□□□□ -2.09
CCDC88BA6NC98 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC88BA6NC98 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms