Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 HMGB3P12-201ENST00000438745 556 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 DPPA3P1-201ENST00000448050 469 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 UBE2CP3-201ENST00000502715 450 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 NARSP2-201ENST00000518524 679 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC087369.1-201ENST00000520775 996 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC022616.3-201ENST00000523940 148 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AP003385.6-201ENST00000531603 374 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 SETP7-201ENST00000552169 453 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC069200.1-201ENST00000609511 323 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 uc_338.12-201ENST00000616344 181 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AC092794.2-201ENST00000620933 563 ntBASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.14□□□□□ -1.75
SSX2IPQ9Y2D8 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 NMD3P1-201ENST00000439704 1488 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU5A-8P-201ENST00000364102 114 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU6-169P-201ENST00000365336 107 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU6-108P-201ENST00000365558 107 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU1-39P-201ENST00000383897 165 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 U8.11-201ENST00000384699 133 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 U8.12-201ENST00000384701 133 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU6-821P-201ENST00000390995 107 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC009237.5-201ENST00000414271 501 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC138393.2-201ENST00000414742 246 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 GPR143P-201ENST00000434155 205 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC083863.1-201ENST00000438811 231 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 MTND5P20-201ENST00000448677 143 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 PPIAP3-201ENST00000450588 505 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC108059.3-201ENST00000456388 214 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 U8.18-201ENST00000459285 133 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 SNORD108-201ENST00000459332 71 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RPL7P49-201ENST00000471402 708 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNU6-1281P-201ENST00000516223 105 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RN7SKP116-201ENST00000516902 319 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RNA5SP337-201ENST00000517007 109 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC104383.1-201ENST00000530297 370 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 OR4P1P-201ENST00000530808 1136 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 OR8L1P-201ENST00000534005 955 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AL359212.1-201ENST00000556608 614 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 COX6CP3-201ENST00000580869 223 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC112204.3-201ENST00000623822 332 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AC005609.4-201ENST00000625071 447 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 AL138713.1-201ENST00000624026 2130 ntBASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SSX2IPQ9Y2D8 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 RNU6-1120P-201ENST00000362988 108 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AL353193.1-201ENST00000421444 268 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC007283.2-201ENST00000424739 197 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 HMGB1P37-201ENST00000439613 609 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 RAC1P7-201ENST00000445367 377 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 UBDP1-202ENST00000457888 382 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC022364.2-201ENST00000457963 554 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AP000873.1-201ENST00000463987 400 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AL049830.2-201ENST00000480072 201 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 RPL36AP51-201ENST00000487216 318 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC069439.1-201ENST00000494739 167 ntBASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.12□□□□□ -1.75
SSX2IPQ9Y2D8 Vault.1-201ENST00000516474 102 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms