Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 RNA5SP217-201ENST00000515959 91 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 SNORA70.16-201ENST00000516390 95 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 SNORA74D-201ENST00000516404 141 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 SNORA64.4-201ENST00000516632 81 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 PSMA2P1-201ENST00000526365 646 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 TRAV37-201ENST00000553906 342 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MIR3921-201ENST00000577308 85 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 WISP1-OT1-201ENST00000602893 642 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AP000403.1-201ENST00000603349 851 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC025811.1-201ENST00000604312 472 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AL591516.1-201ENST00000611326 274 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MIR6130-201ENST00000619419 109 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC079597.1-201ENST00000624306 508 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AC097655.1-201ENST00000635075 318 ntBASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CPSF3Q9UKF6 MTND5P33-201ENST00000571250 1450 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC009902.3-201ENST00000606235 2172 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 DEFB108F-201ENST00000344638 222 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 SNORD56.3-201ENST00000363507 71 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 SNORD67-201ENST00000390833 111 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC110754.1-201ENST00000399740 601 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RN7SKP220-201ENST00000410611 288 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RNU6-920P-201ENST00000410926 92 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 HSPE1P1-201ENST00000421494 318 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 TMEM167AP1-201ENST00000423409 219 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 TRIAP1P1-201ENST00000427062 225 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RPL26P6-201ENST00000440913 438 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RPL7P36-201ENST00000444633 681 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC140076.1-201ENST00000449897 361 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RPS27P29-201ENST00000463110 252 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 SETP11-201ENST00000473027 690 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 RPL30P14-201ENST00000482744 348 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC108860.1-201ENST00000484521 383 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC109464.2-201ENST00000510242 943 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 SNORA31.22-201ENST00000517204 135 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 DEFB108D-201ENST00000527787 222 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC007834.2-201ENST00000536310 343 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC055876.1-202ENST00000567053 138 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC060771.1-201ENST00000582031 164 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 MIR4325-201ENST00000583049 90 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC112187.2-201ENST00000604345 283 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC091965.4-201ENST00000607691 587 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 MIR7844-201ENST00000616161 122 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC022079.1-201ENST00000621546 602 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AF246928.1-201ENST00000623768 87 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AP003122.6-201ENST00000623831 495 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AC006927.3-201ENST00000638789 384 ntBASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CPSF3Q9UKF6 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 RNU5E-8P-201ENST00000363502 116 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 MIR493-201ENST00000385254 89 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 U8.14-201ENST00000390843 143 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AL031577.2-201ENST00000404133 280 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 RPL7P25-201ENST00000404151 721 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AL359704.1-201ENST00000411586 781 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 TPMTP3-201ENST00000411928 735 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 MRPL50P2-201ENST00000416821 482 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC245291.1-201ENST00000419501 328 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 RPS27AP14-201ENST00000422868 454 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 GDI2P2-201ENST00000445131 608 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AL359385.1-201ENST00000456509 365 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 RPL27AP5-201ENST00000469428 449 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC026801.2-201ENST00000515352 425 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 OSBPL9P5-201ENST00000542581 171 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 245 ms