Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 RNU6-349P-201ENST00000362402 107 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 SNORD61-201ENST00000384252 73 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 MRPS21P5-201ENST00000417885 231 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 AC099548.1-201ENST00000421443 426 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 AL121916.1-201ENST00000429405 308 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 HLA-DPA3-207ENST00000454398 229 ntBASIC9.68□□□□□ -0.86
SENP3Q9H4L4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
SENP3Q9H4L4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 RNU1-64P-201ENST00000365443 163 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 SNORA67.2-201ENST00000384300 149 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 RNA5SP474-201ENST00000391234 90 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 Y_RNA.625-201ENST00000411256 107 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 UBE2Q2P9-201ENST00000490086 202 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 RN7SL187P-201ENST00000495587 303 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 AC016588.2-201ENST00000632484 3021 ntBASIC9.67□□□□□ -0.86
SENP3Q9H4L4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
SENP3Q9H4L4 AL353807.3-201ENST00000500626 2505 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 RNA5SP321-201ENST00000362722 111 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 Y_RNA.796-201ENST00000364268 102 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 Y_RNA.799-201ENST00000364992 102 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 RNU1-84P-201ENST00000365447 164 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 U8.12-201ENST00000384701 133 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 MIR605-201ENST00000385078 83 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 Z98745.1-201ENST00000402553 494 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC009238.1-201ENST00000442165 424 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC009237.6-201ENST00000446969 424 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 RPSAP75-201ENST00000605848 301 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AL589743.6-201ENST00000611025 117 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 OR2AH1P-202ENST00000641232 2744 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 OR52B5P-204ENST00000641744 3467 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 AC010401.2-201ENST00000575137 4934 ntBASIC9.66□□□□□ -0.86
SENP3Q9H4L4 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
SENP3Q9H4L4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 LPAL2-203ENST00000454031 2498 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AC005614.1-201ENST00000598952 3653 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RNU6-457P-201ENST00000363999 107 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 SNORD58A-201ENST00000383875 65 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 MIR188-201ENST00000385034 86 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RNU6-750P-201ENST00000390946 107 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 MIR1178-201ENST00000408396 91 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AC079780.1-201ENST00000428259 207 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RN7SL515P-201ENST00000463999 297 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 RN7SL807P-201ENST00000470923 297 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AC146944.3-201ENST00000509969 371 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 AC100827.5-201ENST00000615883 426 ntBASIC9.65□□□□□ -0.86
SENP3Q9H4L4 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC9.65□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms