Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC132479.1-201ENST00000449160 144 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC093392.2-201ENST00000450682 337 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.35□□□□□ -1.71
NUP88Q99567 RPL7P49-201ENST00000471402 708 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC126182.1-201ENST00000478134 357 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.35□□□□□ -1.71
NUP88Q99567 AL117351.2-201ENST00000513571 157 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 MTND4LP26-201ENST00000518144 282 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 HMGB1P41-201ENST00000520234 440 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC090281.1-201ENST00000523019 276 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC135001.1-201ENST00000544546 283 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.35□□□□□ -1.71
NUP88Q99567 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.35□□□□□ -1.71
NUP88Q99567 MTATP6P3-201ENST00000581686 676 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.35□□□□□ -1.71
NUP88Q99567 GLUD1P4-201ENST00000590914 418 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AC103710.2-201ENST00000609912 942 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.35□□□□□ -1.71
NUP88Q99567 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.35□□□□□ -1.71
NUP88Q99567 U4.5-201ENST00000617137 123 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.35□□□□□ -1.71
NUP88Q99567 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.35□□□□□ -1.71
NUP88Q99567 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.35□□□□□ -1.71
NUP88Q99567 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
NUP88Q99567 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
NUP88Q99567 FAM35DP-201ENST00000323387 2712 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.35□□□□□ -1.71
NUP88Q99567 AC009812.4-201ENST00000569134 1805 ntBASIC4.35□□□□□ -1.71
NUP88Q99567 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
NUP88Q99567 RNU1-39P-201ENST00000383897 165 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 RNU6-641P-201ENST00000384006 107 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 RNU6-39P-201ENST00000384344 107 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
NUP88Q99567 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
NUP88Q99567 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC110754.1-201ENST00000399740 601 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AL590002.1-201ENST00000406554 418 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 MIR548F1-201ENST00000408667 84 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC079781.2-201ENST00000446424 169 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 MTND2P24-201ENST00000453434 806 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 SNRPGP5-201ENST00000456003 220 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC010631.1-201ENST00000474150 156 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC106707.2-201ENST00000484182 374 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
NUP88Q99567 BTF3L4P4-201ENST00000506381 449 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.34□□□□□ -1.71
NUP88Q99567 SCARNA24.1-201ENST00000516465 137 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 RNA5SP164-201ENST00000516533 110 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.34□□□□□ -1.71
NUP88Q99567 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC008011.1-201ENST00000545989 227 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC093012.1-202ENST00000549403 582 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.34□□□□□ -1.71
NUP88Q99567 ARL2BPP2-201ENST00000550907 489 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.34□□□□□ -1.71
NUP88Q99567 MIR4293-201ENST00000584305 78 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.34□□□□□ -1.71
NUP88Q99567 AC008536.2-201ENST00000607284 349 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AL391261.4-201ENST00000616012 481 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
NUP88Q99567 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.34□□□□□ -1.71
NUP88Q99567 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
NUP88Q99567 GABPAP-201ENST00000419271 1356 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NUP88Q99567 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
NUP88Q99567 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NUP88Q99567 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NUP88Q99567 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NUP88Q99567 PNPT1P2-201ENST00000456768 2050 ntBASIC4.34□□□□□ -1.71
NUP88Q99567 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
NUP88Q99567 AL161912.2-201ENST00000565707 3007 ntBASIC4.34□□□□□ -1.72
NUP88Q99567 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
NUP88Q99567 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.34□□□□□ -1.72
NUP88Q99567 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NUP88Q99567 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.33□□□□□ -1.72
NUP88Q99567 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.33□□□□□ -1.72
NUP88Q99567 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NUP88Q99567 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 RNU4-12P-201ENST00000365233 139 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 Y_RNA.372-201ENST00000365599 102 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NUP88Q99567 Y_RNA.409-201ENST00000383990 98 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 MIR181A1-201ENST00000385026 110 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
NUP88Q99567 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
NUP88Q99567 RNU2-36P-201ENST00000410361 191 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 EIF1P1-201ENST00000421436 341 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.33□□□□□ -1.72
NUP88Q99567 MTCO3P30-201ENST00000426425 670 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.33□□□□□ -1.72
NUP88Q99567 USP12PX-201ENST00000432383 1057 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 RPL26P6-201ENST00000440913 438 ntBASIC4.33□□□□□ -1.72
NUP88Q99567 Z99127.3-201ENST00000448158 395 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms