Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AL049734.2-201ENST00000441066 616 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 MTND3P1-201ENST00000441336 220 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 CBWD4P-201ENST00000445695 655 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 RPS3AP43-201ENST00000479743 781 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 LARP1BP2-201ENST00000486594 519 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 RN7SL504P-201ENST00000494496 287 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 OR2A20P-203ENST00000498397 1268 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC010587.2-201ENST00000511727 448 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 RNU6-150P-201ENST00000516237 95 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 CYCSP2-201ENST00000558168 301 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC004987.4-201ENST00000603383 338 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC007179.3-201ENST00000604976 235 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 YPEL5P2-201ENST00000605553 359 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC079395.3-201ENST00000615161 484 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AL445264.1-201ENST00000621719 171 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC010338.1-201ENST00000621823 717 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC009487.2-201ENST00000420969 6821 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS39Q96JC1 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VPS39Q96JC1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS39Q96JC1 RNU1-35P-201ENST00000362782 153 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 RNU6-621P-201ENST00000364752 109 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 SNORA9.2-201ENST00000365361 133 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 RNU6-359P-201ENST00000365466 108 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 SET-203ENST00000372688 801 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS39Q96JC1 RNU6-741P-201ENST00000383889 107 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 MIR181B1-201ENST00000385240 110 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 MTND4P13-201ENST00000402078 1023 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 TPMTP3-201ENST00000411928 735 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL390023.1-201ENST00000428836 262 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 RPS29P6-201ENST00000438196 145 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 Z82210.1-201ENST00000440037 231 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 BNIP3P2-201ENST00000441221 577 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 PIGFP3-201ENST00000441918 722 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 RPL23AP20-201ENST00000447965 421 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL162389.1-201ENST00000449233 177 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC104978.1-201ENST00000449387 391 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 BX322784.1-201ENST00000455793 1077 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 BX510359.1-201ENST00000456973 237 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AP1S2P1-201ENST00000457344 379 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 FAM172BP-201ENST00000487497 1089 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC006445.1-201ENST00000491925 405 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC113155.1-201ENST00000511141 769 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC109445.1-201ENST00000512356 383 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC008885.1-201ENST00000514930 301 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 RNU6-714P-201ENST00000516963 103 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 MRPS36P3-201ENST00000519284 130 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 DEFB131D-201ENST00000526803 184 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 MTND1P24-201ENST00000552175 861 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 TRAV28-201ENST00000557548 323 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC061975.8-201ENST00000587058 721 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC015871.2-201ENST00000603605 948 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL161729.4-201ENST00000604650 476 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC103710.4-201ENST00000609301 899 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL020991.1-201ENST00000612314 373 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC013476.2-201ENST00000614456 459 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 AL603758.1-201ENST00000618654 241 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 AC084035.1-201ENST00000634543 607 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 LRRC77P-213ENST00000637727 880 ntBASIC2.92□□□□□ -1.94
VPS39Q96JC1 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS39Q96JC1 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS39Q96JC1 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS39Q96JC1 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS39Q96JC1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS39Q96JC1 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS39Q96JC1 RNU6-777P-201ENST00000364265 104 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms