Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 HMGB1P41-201ENST00000520234 440 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AL512310.1-201ENST00000548639 172 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 AC107016.1-201ENST00000550463 337 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 ARL2BPP2-201ENST00000550907 489 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.26□□□□□ -1.73
HPS3Q969F9 HMGB1P33-201ENST00000563485 527 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 AC034105.4-201ENST00000568304 277 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 RN7SL703P-201ENST00000578485 302 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AL606834.2-201ENST00000602954 668 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 AC007363.1-201ENST00000604736 620 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.26□□□□□ -1.73
HPS3Q969F9 AL355810.1-201ENST00000614629 552 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 FP236240.3-201ENST00000623061 327 ntBASIC4.26□□□□□ -1.73
HPS3Q969F9 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.26□□□□□ -1.73
HPS3Q969F9 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
HPS3Q969F9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HPS3Q969F9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HPS3Q969F9 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HPS3Q969F9 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HPS3Q969F9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
HPS3Q969F9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.25□□□□□ -1.73
HPS3Q969F9 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HPS3Q969F9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HPS3Q969F9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HPS3Q969F9 SNORA31-201ENST00000362607 130 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 RNU6-39P-201ENST00000384344 107 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC008850.1-201ENST00000427546 362 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC017083.1-201ENST00000428093 483 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 RPL23AP30-201ENST00000432419 501 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.25□□□□□ -1.73
HPS3Q969F9 CYCSP43-201ENST00000438233 310 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 RPL26P6-201ENST00000440913 438 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.25□□□□□ -1.73
HPS3Q969F9 MTND2P24-201ENST00000453434 806 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC084198.1-201ENST00000477747 402 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC108860.1-201ENST00000484521 383 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 NIPA2P2-201ENST00000496376 1083 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 SNORA31.22-201ENST00000517204 135 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.25□□□□□ -1.73
HPS3Q969F9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HPS3Q969F9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
HPS3Q969F9 RPL23AP84-201ENST00000571193 464 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.6-201ENST00000603753 252 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.11-201ENST00000604059 253 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AP001330.4-201ENST00000604350 154 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC008162.1-201ENST00000604718 254 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.1-201ENST00000604752 252 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.5-201ENST00000605253 252 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.12-201ENST00000605291 253 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.8-201ENST00000605353 252 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 BRDTP1-201ENST00000605735 677 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 HMGB1P50-201ENST00000605814 607 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AL670379.7-201ENST00000605823 252 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AP002360.4-201ENST00000606980 481 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC008536.2-201ENST00000607284 349 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 AC012531.5-201ENST00000611375 151 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 SDR42E1P2-201ENST00000614861 481 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
HPS3Q969F9 AC005609.4-201ENST00000625071 447 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.25□□□□□ -1.73
HPS3Q969F9 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.25□□□□□ -1.73
HPS3Q969F9 AC006504.1-201ENST00000562493 3666 ntBASIC4.25□□□□□ -1.73
HPS3Q969F9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HPS3Q969F9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HPS3Q969F9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.24□□□□□ -1.73
HPS3Q969F9 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.24□□□□□ -1.73
HPS3Q969F9 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HPS3Q969F9 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 DEFB108F-201ENST00000344638 222 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU5A-1-201ENST00000362698 116 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 Y_RNA.159-201ENST00000363674 87 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RN7SKP280-201ENST00000364196 304 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU5E-6P-201ENST00000365574 115 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 Y_RNA.409-201ENST00000383990 98 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU6-641P-201ENST00000384006 107 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 MIR554-201ENST00000384874 96 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 MIR199A2-201ENST00000385289 110 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HPS3Q969F9 AL359634.1-202ENST00000404721 284 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU2-36P-201ENST00000410361 191 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RN7SKP202-201ENST00000410439 330 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU2-39P-201ENST00000410604 198 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AMD1P2-201ENST00000412936 992 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RAC1P6-201ENST00000423911 575 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RPL7L1P10-201ENST00000427790 463 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.24□□□□□ -1.73
HPS3Q969F9 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.24□□□□□ -1.73
HPS3Q969F9 AL500522.2-201ENST00000448562 343 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 AC003071.1-201ENST00000451219 789 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 HMGN2P7-201ENST00000456186 273 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AC027673.1-201ENST00000456245 405 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms