Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 CDC42P4-201ENST00000510507 563 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 MTND4LP18-201ENST00000526864 291 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC008015.1-201ENST00000555505 465 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC090970.3-201ENST00000612566 866 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC073308.1-201ENST00000623696 305 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC097655.1-201ENST00000635075 318 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 AC093010.3-201ENST00000570269 15214 ntBASIC3.42□□□□□ -1.86
PRPF39Q86UA1 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.42□□□□□ -1.86
PRPF39Q86UA1 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL049641.1-201ENST00000441055 1948 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RNU6-501P-201ENST00000364072 100 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RNU6-741P-201ENST00000383889 107 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RNU6-809P-201ENST00000384461 107 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RPL22P17-201ENST00000438729 315 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 HMGB3P11-201ENST00000440127 604 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC108059.3-201ENST00000456388 214 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RNU7-125P-201ENST00000458760 62 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RPL21P8-201ENST00000465083 535 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC068587.2-201ENST00000478386 781 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RPL21P13-201ENST00000488305 481 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC114967.1-201ENST00000504890 259 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 APOOP4-201ENST00000513530 597 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 RNU6-928P-201ENST00000516876 104 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC123904.3-201ENST00000547218 814 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 HMGB1P14-201ENST00000557424 591 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC090616.2-202ENST00000584248 222 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 MIR4276-201ENST00000584832 70 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL133393.1-201ENST00000603277 287 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC012150.2-201ENST00000621300 544 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC110774.1-201ENST00000623567 2018 ntBASIC3.41□□□□□ -1.86
PRPF39Q86UA1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.4□□□□□ -1.86
PRPF39Q86UA1 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRPF39Q86UA1 RNA5SP383-201ENST00000362934 120 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 SNORD56.3-201ENST00000363507 71 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 CD24P4-201ENST00000382840 243 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 Z92545.1-201ENST00000411782 234 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC012498.1-201ENST00000424037 437 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 RPL23AP69-201ENST00000431134 458 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 USP12PX-201ENST00000432383 1057 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 RPL23AP22-201ENST00000437556 453 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 PIGFP3-201ENST00000441918 722 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC010099.1-201ENST00000455434 375 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 snoU13.28-201ENST00000459235 104 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 RPL23AP67-201ENST00000465341 474 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 RPS3AP22-201ENST00000488297 769 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 NRON-201ENST00000517270 370 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC068657.1-201ENST00000520807 306 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC093331.1-201ENST00000521474 169 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 HMGB1P6-201ENST00000569046 646 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 GLUD1P4-201ENST00000590914 418 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AP001981.2-201ENST00000603241 418 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 AC004223.4-201ENST00000612426 332 ntBASIC3.4□□□□□ -1.87
PRPF39Q86UA1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms