Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AL136520.1-201ENST00000600311 1322 ntBASIC1.15□□□□□ -2.23
CSPG4Q6UVK1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 MIR758-201ENST00000390227 88 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 RPL30P3-201ENST00000424262 333 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 RPS6P14-201ENST00000425165 719 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 OR4V1P-201ENST00000525394 1140 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 SETP7-201ENST00000552169 453 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC023825.1-201ENST00000566704 1030 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 MIR4446-201ENST00000578505 67 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 Y_RNA.274-201ENST00000364714 101 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 Y_RNA.303-201ENST00000364998 94 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 MIR320A-201ENST00000385302 82 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AL445183.3-201ENST00000414168 502 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 RPL21P39-201ENST00000463605 483 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 RPL21P93-201ENST00000480465 489 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC233702.1-201ENST00000482905 502 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC093591.1-201ENST00000491435 481 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 AC011472.4-201ENST00000615848 491 ntBASIC1.14□□□□□ -2.23
CSPG4Q6UVK1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 RNU6-716P-201ENST00000365621 103 ntBASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 ANAPC10P1-201ENST00000395991 556 ntBASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 SNORA31.24-201ENST00000517232 57 ntBASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 AC135776.4-201ENST00000624300 1904 ntBASIC1.13□□□□□ -2.23
CSPG4Q6UVK1 RNU2-25P-201ENST00000411041 191 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 Z85994.2-201ENST00000434327 452 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 HSFY3P-201ENST00000444242 1191 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 RPS29P29-201ENST00000456396 171 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 RNU7-157P-201ENST00000459600 66 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 RNU2-40P-201ENST00000410833 196 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC022022.1-201ENST00000430304 178 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 EZH2P1-201ENST00000431167 291 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 CKS1BP5-201ENST00000434172 273 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 CUL4AP1-201ENST00000514750 1863 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 RNA5SP395-201ENST00000516567 118 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 TRAV28-201ENST00000557548 323 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AC083806.3-201ENST00000614016 455 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 AL356118.1-201ENST00000635272 1078 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 FO624990.1-201ENST00000636373 85 ntBASIC1.12□□□□□ -2.23
CSPG4Q6UVK1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RNU6-799P-201ENST00000363567 107 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 CLIC4P1-201ENST00000453177 535 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RPS23P4-201ENST00000487908 423 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RNA5SP82-201ENST00000516707 92 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AF279873.1-201ENST00000523393 313 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 DUXAP5-201ENST00000529668 529 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 HSPE1P20-201ENST00000538133 289 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC091057.2-201ENST00000602594 792 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC073413.2-201ENST00000604332 360 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC080100.1-201ENST00000624239 5356 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC009541.1-201ENST00000438279 2662 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RNU6-492P-201ENST00000363035 104 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 SNORD48-201ENST00000364953 64 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RNU6-225P-201ENST00000384613 103 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RNA5SP127-201ENST00000411051 133 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 BX682237.1-201ENST00000415016 335 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AL358176.2-201ENST00000425769 204 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 RPS15AP7-201ENST00000439294 405 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 SUB1P4-201ENST00000566062 339 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 YWHAQP7-201ENST00000603536 658 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AL138955.1-201ENST00000622881 1040 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 AC138915.1-201ENST00000565427 1685 ntBASIC1.11□□□□□ -2.23
CSPG4Q6UVK1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 RNA5SP393-201ENST00000363423 117 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 Y_RNA.390-201ENST00000383932 102 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 CCNB2P1-201ENST00000399411 1150 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AL030996.1-201ENST00000411430 235 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC073464.3-201ENST00000422564 712 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AL445669.1-201ENST00000426743 755 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC004223.1-201ENST00000479840 271 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms