Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU7-66P-201ENST00000459469 62 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC093303.1-201ENST00000514549 295 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC100770.1-201ENST00000532310 322 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.35□□□□□ -1.71
USP39Q53GS9 APOOP3-201ENST00000536787 586 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC004817.2-201ENST00000561794 651 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 MIR3146-201ENST00000580367 79 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC053481.4-201ENST00000583164 216 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC007938.3-201ENST00000604965 623 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 FAM27D1-201ENST00000612308 341 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AL021997.2-201ENST00000615674 271 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC099669.2-201ENST00000616549 437 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 MIR6875-201ENST00000617506 72 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
USP39Q53GS9 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC004972.1-201ENST00000623934 2209 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
USP39Q53GS9 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AP004289.2-201ENST00000444413 1457 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.34□□□□□ -1.71
USP39Q53GS9 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.34□□□□□ -1.71
USP39Q53GS9 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
USP39Q53GS9 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.34□□□□□ -1.71
USP39Q53GS9 Y_RNA.28-201ENST00000362554 111 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 Y_RNA.193-201ENST00000363979 102 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 RNU4-48P-201ENST00000365559 182 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 PRRC2CP1-201ENST00000404428 159 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 RPL23AP48-201ENST00000406913 488 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 MIR548F4-201ENST00000408515 105 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 RNU4-26P-201ENST00000410270 107 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 RPL7L1P10-201ENST00000427790 463 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 MTCYBP9-201ENST00000431021 303 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.34□□□□□ -1.71
USP39Q53GS9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.34□□□□□ -1.71
USP39Q53GS9 PABPC1P3-201ENST00000469174 459 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AC022795.1-201ENST00000473808 480 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 RPL21P99-201ENST00000480369 423 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AC021146.1-201ENST00000511202 716 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 RN7SKP219-201ENST00000516825 296 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 SOD1P3-201ENST00000518682 454 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AP001804.3-201ENST00000525146 880 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AP005435.4-201ENST00000529514 284 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.34□□□□□ -1.71
USP39Q53GS9 CTHRC1P1-201ENST00000605383 469 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 HSPE1P14-201ENST00000605812 302 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.34□□□□□ -1.71
USP39Q53GS9 AC119674.1-207ENST00000641355 633 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AL596275.2-204ENST00000641628 552 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 AL596275.2-206ENST00000641957 626 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.34□□□□□ -1.71
USP39Q53GS9 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
USP39Q53GS9 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
USP39Q53GS9 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
USP39Q53GS9 NXPH1-205ENST00000602349 1953 ntBASIC4.34□□□□□ -1.71
USP39Q53GS9 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP39Q53GS9 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
USP39Q53GS9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
USP39Q53GS9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
USP39Q53GS9 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.33□□□□□ -1.72
USP39Q53GS9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 Y_RNA.22-201ENST00000362492 102 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RNU1-14P-201ENST00000362759 152 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 Y_RNA.187-201ENST00000363918 113 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RNA5SP22-201ENST00000365393 109 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms