Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC135721.1-201ENST00000497954 479 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 VN1R104P-201ENST00000505115 1009 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 ARL2BPP6-201ENST00000512757 439 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AP001804.3-201ENST00000525146 880 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 DEFB108D-201ENST00000527787 222 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC010653.1-201ENST00000571108 881 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC005771.1-201ENST00000585581 349 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC004223.2-201ENST00000590309 544 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 BDH2P1-201ENST00000602288 736 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL137849.1-201ENST00000604767 169 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC064872.1-201ENST00000604823 1072 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 BX664608.1-201ENST00000610519 487 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC135507.2-201ENST00000612443 309 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC090970.3-201ENST00000612566 866 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC092140.2-201ENST00000618027 521 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 U7.8-201ENST00000619968 63 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC092656.1-203ENST00000624134 423 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL603839.4-201ENST00000624658 1005 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC019226.1-201ENST00000625666 515 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 OR5BE1P-202ENST00000641168 1176 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 ZNF826P-207ENST00000622273 1910 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC103988.1-201ENST00000566382 2177 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL035425.3-201ENST00000564206 4996 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC090740.1-201ENST00000623193 2262 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RNU5E-8P-201ENST00000363502 116 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 U8.11-201ENST00000384699 133 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 U8.12-201ENST00000384701 133 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 DEFB108C-201ENST00000400154 252 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 MRPL42P2-201ENST00000403169 426 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RPS3AP3-201ENST00000411933 242 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AL589872.1-201ENST00000426602 288 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RPL21P40-201ENST00000428586 483 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AL049734.2-201ENST00000441066 616 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 UBDP1-202ENST00000457888 382 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 U8.18-201ENST00000459285 133 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RN7SL601P-201ENST00000471221 293 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RPL7P23-201ENST00000493874 747 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC082651.2-201ENST00000496833 166 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 HMGN1P11-201ENST00000508668 303 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC079140.3-201ENST00000511111 550 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 RNU6-390P-201ENST00000516259 103 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC107934.1-201ENST00000522215 217 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AP003122.4-201ENST00000530980 758 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC024909.2-201ENST00000553035 286 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 MIR3913-1-201ENST00000577744 102 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC136601.2-201ENST00000604356 474 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AL359999.1-201ENST00000604513 294 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC131902.3-201ENST00000611767 581 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC006338.1-201ENST00000618453 749 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC099842.1-201ENST00000619919 596 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC009268.2-201ENST00000621925 457 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 AC244258.1-201ENST00000637553 1071 ntBASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.11□□□□□ -1.91
PDLIM3Q53GG5 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNU4-24P-201ENST00000364565 139 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNY3P13-201ENST00000365542 102 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNU1-39P-201ENST00000383897 165 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 SNORA75-201ENST00000384158 137 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNU6-278P-201ENST00000390945 109 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 SAR1AP2-201ENST00000392696 594 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms