Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.06□□□□□ -1.76
COL4A3Q01955 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.06□□□□□ -1.76
COL4A3Q01955 HMGB3P22-202ENST00000451823 572 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RN7SL429P-201ENST00000479090 223 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC012158.1-204ENST00000483430 465 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RN7SL489P-201ENST00000486185 223 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RN7SL327P-201ENST00000488659 223 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC011979.2-201ENST00000527568 352 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC128657.1-201ENST00000549459 145 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC124312.5-201ENST00000604451 268 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 APOOP1-201ENST00000604695 592 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RN7SL853P-201ENST00000617250 223 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 AL049781.1-201ENST00000623195 3585 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 MTND5P28-201ENST00000438005 1594 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC009902.3-201ENST00000606235 2172 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 RNU6-1226P-201ENST00000384317 107 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 RNU6-39P-201ENST00000384344 107 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 RNVU1-14-201ENST00000384770 164 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 MIR558-201ENST00000384920 94 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 MIR514A2-201ENST00000385131 88 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 MIR514A3-201ENST00000385132 88 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 MTCYBP4-201ENST00000401524 249 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC108059.2-201ENST00000434626 151 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC087879.1-201ENST00000474343 374 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 RPS29P2-201ENST00000479278 136 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 RN7SL293P-201ENST00000481765 281 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC103843.2-201ENST00000530523 682 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A3Q01955 MIR4775-201ENST00000581168 75 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 AL451044.1-201ENST00000604867 238 ntBASIC4.05□□□□□ -1.76
COL4A3Q01955 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
COL4A3Q01955 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A3Q01955 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A3Q01955 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 Z82217.1-201ENST00000625157 8149 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 Y_RNA.367-201ENST00000365544 101 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RNU4-20P-201ENST00000365601 151 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.04□□□□□ -1.76
COL4A3Q01955 SOD2P1-201ENST00000396543 562 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RNU2-29P-201ENST00000410423 189 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RNU2-39P-201ENST00000410604 198 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RNU4-14P-201ENST00000410858 122 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC074085.1-201ENST00000413598 418 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RPS3AP52-201ENST00000435639 297 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC104073.1-201ENST00000451988 151 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.04□□□□□ -1.76
COL4A3Q01955 MTND5P22-201ENST00000458380 195 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 Y_RNA.635-201ENST00000459041 101 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RPL23AP11-201ENST00000475260 469 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC012181.1-201ENST00000479895 423 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 UBE2CP3-201ENST00000502715 450 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A3Q01955 Y_RNA.665-201ENST00000516177 98 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RPL7P20-201ENST00000520308 745 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A3Q01955 SNRPGP18-201ENST00000553000 214 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RPL23AP87-202ENST00000573039 466 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC100830.2-201ENST00000581636 240 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
COL4A3Q01955 UBE2L4-201ENST00000587688 464 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 DPPA3P3-201ENST00000603842 430 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms