Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC002543.1-201ENST00000299783 1954 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 RNU6-1283P-201ENST00000365314 105 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 Y_RNA.516-201ENST00000384541 124 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 Y_RNA.540-201ENST00000384638 111 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 RPS3AP24-201ENST00000407896 734 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 MTND1P2-201ENST00000430604 821 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 MTND3P23-201ENST00000431980 347 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 RPS6P12-201ENST00000432491 726 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 MTCYBP42-201ENST00000444653 1130 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 EPS15P1-201ENST00000448836 336 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 RPL36AP33-201ENST00000450395 310 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 TPMTP4-201ENST00000450749 678 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 MTND2P24-201ENST00000453434 806 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 GTF2IP12-201ENST00000456547 356 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 MTAPP1-201ENST00000489154 819 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.63□□□□□ -1.99
COL4A4P53420 CBX3P3-201ENST00000508108 532 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC091965.2-201ENST00000512324 613 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC022447.1-201ENST00000515358 464 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AP001317.1-201ENST00000531194 960 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 ROCK1P1-201ENST00000573767 549 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC022884.3-201ENST00000579571 248 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.63□□□□□ -1.99
COL4A4P53420 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.63□□□□□ -1.99
COL4A4P53420 VN1R83P-201ENST00000595685 445 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
COL4A4P53420 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 AC093909.5-201ENST00000621839 1799 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 RNU6-553P-201ENST00000364047 96 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 Y_RNA.390-201ENST00000383932 102 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 SNORD21-201ENST00000383953 95 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 RNU6-224P-201ENST00000384055 107 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 FNDC3CP-201ENST00000420795 1155 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A4P53420 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.63□□□□□ -1.99
COL4A4P53420 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC108860.1-201ENST00000484521 383 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 RPL9P6-201ENST00000492764 598 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC084024.2-201ENST00000503480 791 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 HSPE1P23-201ENST00000509838 286 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC093770.1-201ENST00000511559 571 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 RNU6-528P-201ENST00000516926 100 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 DEFB130C-202ENST00000530001 230 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 ELOCP31-201ENST00000540463 467 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.63□□□□□ -1.99
COL4A4P53420 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC2.63□□□□□ -1.99
COL4A4P53420 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A4P53420 DUXAP1-201ENST00000556632 463 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A4P53420 ISCA1P3-201ENST00000577104 373 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 MIR3611-201ENST00000584484 83 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AC015688.2-201ENST00000584523 262 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AP000942.3-201ENST00000603702 160 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 AP004372.1-201ENST00000604842 844 ntBASIC2.63□□□□□ -1.99
COL4A4P53420 NSRP1P1-201ENST00000444067 1693 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A4P53420 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A4P53420 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 MTND4P31-201ENST00000425607 1343 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A4P53420 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A4P53420 AC087359.1-201ENST00000508335 1740 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A4P53420 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
COL4A4P53420 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A4P53420 AL391994.1-201ENST00000254724 282 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A4P53420 RNU6-157P-201ENST00000383957 107 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RNU1-73P-201ENST00000383971 164 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 MTCO1P17-201ENST00000411522 491 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPL23AP36-201ENST00000413895 458 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPL31P45-201ENST00000419532 356 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms