Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SNORA70.24-201ENST00000517233 118 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.05□□□□□ -1.92
SOX3P41225 AC024909.2-201ENST00000553035 286 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX3P41225 MTCYBP33-201ENST00000575007 1130 ntBASIC3.05□□□□□ -1.92
SOX3P41225 ZNF415P1-201ENST00000582279 1166 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC005771.1-201ENST00000585581 349 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 CKS1BP3-201ENST00000600888 237 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL606834.2-201ENST00000602954 668 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC064872.1-201ENST00000604823 1072 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX3P41225 U1.23-201ENST00000610293 146 ntBASIC3.05□□□□□ -1.92
SOX3P41225 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.05□□□□□ -1.92
SOX3P41225 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.05□□□□□ -1.92
SOX3P41225 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 RNU1-68P-201ENST00000615382 146 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC092140.2-201ENST00000618027 521 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC009159.1-201ENST00000618386 642 ntBASIC3.05□□□□□ -1.92
SOX3P41225 U1.39-201ENST00000621562 146 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL360181.4-201ENST00000621752 134 ntBASIC3.05□□□□□ -1.92
SOX3P41225 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 AC090582.1-201ENST00000636321 199 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL138713.1-201ENST00000624026 2130 ntBASIC3.05□□□□□ -1.92
SOX3P41225 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.05□□□□□ -1.92
SOX3P41225 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX3P41225 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 TAB3P1-202ENST00000452645 1634 ntBASIC3.04□□□□□ -1.92
SOX3P41225 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 AC017071.1-201ENST00000564407 2204 ntBASIC3.04□□□□□ -1.92
SOX3P41225 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 RNU6-637P-201ENST00000384050 107 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL136372.1-201ENST00000403060 228 ntBASIC3.04□□□□□ -1.92
SOX3P41225 RNU2-37P-201ENST00000410695 177 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 USP9YP13-201ENST00000417797 480 ntBASIC3.04□□□□□ -1.92
SOX3P41225 MORF4L1P6-201ENST00000418771 268 ntBASIC3.04□□□□□ -1.92
SOX3P41225 RPL21P32-201ENST00000419877 477 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 RPL21P66-201ENST00000426566 466 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 VDAC1P3-201ENST00000434069 851 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 USP9YP29-201ENST00000445112 563 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.04□□□□□ -1.92
SOX3P41225 snoU13.4-201ENST00000458916 104 ntBASIC3.04□□□□□ -1.92
SOX3P41225 RPL23AP41-201ENST00000484754 458 ntBASIC3.04□□□□□ -1.92
SOX3P41225 MLLT10P2-201ENST00000506434 249 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SOX3P41225 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX3P41225 HIGD1AP1-201ENST00000550979 275 ntBASIC3.04□□□□□ -1.92
SOX3P41225 OR4T1P-201ENST00000554933 911 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC006362.1-201ENST00000567392 174 ntBASIC3.04□□□□□ -1.92
SOX3P41225 FAM60BP-201ENST00000578364 658 ntBASIC3.04□□□□□ -1.92
SOX3P41225 MIR3690-201ENST00000580266 75 ntBASIC3.04□□□□□ -1.92
SOX3P41225 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 RSL24D1P11-201ENST00000591045 491 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC068790.3-201ENST00000602988 553 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 AL359999.1-201ENST00000604513 294 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC011939.3-201ENST00000613686 466 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL355810.1-201ENST00000614629 552 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AL450472.3-201ENST00000615578 367 ntBASIC3.04□□□□□ -1.92
SOX3P41225 AC048347.1-201ENST00000624621 427 ntBASIC3.04□□□□□ -1.92
SOX3P41225 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX3P41225 MIR3651-201ENST00000630427 90 ntBASIC3.04□□□□□ -1.92
SOX3P41225 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX3P41225 MTND5P27-201ENST00000428871 1720 ntBASIC3.04□□□□□ -1.92
SOX3P41225 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.04□□□□□ -1.92
SOX3P41225 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX3P41225 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
SOX3P41225 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 RNU6-600P-201ENST00000362524 99 ntBASIC3.03□□□□□ -1.92
SOX3P41225 RNU1-70P-201ENST00000362618 164 ntBASIC3.03□□□□□ -1.92
SOX3P41225 SNORA38.1-201ENST00000364172 131 ntBASIC3.03□□□□□ -1.92
SOX3P41225 U3.11-201ENST00000364476 212 ntBASIC3.03□□□□□ -1.92
SOX3P41225 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 MIR491-201ENST00000384877 84 ntBASIC3.03□□□□□ -1.92
SOX3P41225 MIR19A-201ENST00000384878 82 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL357075.1-201ENST00000404107 726 ntBASIC3.03□□□□□ -1.92
SOX3P41225 RNU6-516P-201ENST00000411381 104 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms