Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NDUFA5P7-201ENST00000452914 242 ntBASIC2.54□□□□□ -2
BRCA1P38398 ARPC3P2-201ENST00000457786 533 ntBASIC2.54□□□□□ -2
BRCA1P38398 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC2.54□□□□□ -2
BRCA1P38398 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.54□□□□□ -2
BRCA1P38398 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.54□□□□□ -2
BRCA1P38398 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.54□□□□□ -2
BRCA1P38398 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.54□□□□□ -2
BRCA1P38398 AP001330.4-201ENST00000604350 154 ntBASIC2.54□□□□□ -2
BRCA1P38398 AC005332.6-201ENST00000613178 446 ntBASIC2.54□□□□□ -2
BRCA1P38398 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.54□□□□□ -2
BRCA1P38398 AC002064.3-201ENST00000623448 346 ntBASIC2.54□□□□□ -2
BRCA1P38398 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.54□□□□□ -2
BRCA1P38398 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.53□□□□□ -2
BRCA1P38398 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.53□□□□□ -2
BRCA1P38398 RNU6-115P-201ENST00000364310 107 ntBASIC2.53□□□□□ -2
BRCA1P38398 RNU6-354P-201ENST00000383862 107 ntBASIC2.53□□□□□ -2
BRCA1P38398 RNU6-610P-201ENST00000384264 107 ntBASIC2.53□□□□□ -2
BRCA1P38398 SNORA1.3-201ENST00000384676 136 ntBASIC2.53□□□□□ -2
BRCA1P38398 RNU2-42P-201ENST00000410697 113 ntBASIC2.53□□□□□ -2
BRCA1P38398 AP1B1P2-201ENST00000416196 106 ntBASIC2.53□□□□□ -2
BRCA1P38398 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.53□□□□□ -2
BRCA1P38398 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.53□□□□□ -2
BRCA1P38398 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.53□□□□□ -2
BRCA1P38398 AL353691.1-201ENST00000451332 387 ntBASIC2.53□□□□□ -2
BRCA1P38398 RPL23AP55-201ENST00000498163 452 ntBASIC2.53□□□□□ -2
BRCA1P38398 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.53□□□□□ -2
BRCA1P38398 COX7A2P2-201ENST00000505291 250 ntBASIC2.53□□□□□ -2
BRCA1P38398 AC108078.2-201ENST00000510750 236 ntBASIC2.53□□□□□ -2
BRCA1P38398 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.53□□□□□ -2
BRCA1P38398 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.53□□□□□ -2
BRCA1P38398 AL136520.1-202ENST00000555494 763 ntBASIC2.53□□□□□ -2
BRCA1P38398 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.53□□□□□ -2
BRCA1P38398 MIR4666A-201ENST00000580160 79 ntBASIC2.53□□□□□ -2
BRCA1P38398 MIR6132-201ENST00000622083 109 ntBASIC2.53□□□□□ -2
BRCA1P38398 AC093875.1-201ENST00000623688 504 ntBASIC2.53□□□□□ -2
BRCA1P38398 ZNF663P-202ENST00000641770 1131 ntBASIC2.53□□□□□ -2
BRCA1P38398 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2.01
BRCA1P38398 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
BRCA1P38398 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
BRCA1P38398 RNA5SP139-201ENST00000364340 117 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 Y_RNA.355-201ENST00000365462 98 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6-339P-201ENST00000384310 107 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AL133264.1-201ENST00000407157 562 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC092447.6-201ENST00000414578 210 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 MTCO1P48-201ENST00000448024 1096 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.52□□□□□ -2.01
BRCA1P38398 SNRPGP9-201ENST00000456025 225 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 SUMO2P2-201ENST00000456482 255 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC140059.1-201ENST00000489238 361 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 MTND4LP22-201ENST00000508209 276 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 COL6A4P2-205ENST00000509855 506 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNA5SP135-201ENST00000517019 125 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.52□□□□□ -2.01
BRCA1P38398 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 MIR3921-201ENST00000577308 85 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC090330.1-201ENST00000588646 764 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6-492P-201ENST00000363035 104 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 SNORA26.7-201ENST00000391288 122 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AL445685.2-201ENST00000422551 342 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 OR4K11P-201ENST00000431829 904 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC129850.1-201ENST00000436203 508 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 OR6K5P-201ENST00000447050 945 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AL589880.1-201ENST00000448271 287 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 PABPC1P3-201ENST00000469174 459 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AC005840.1-201ENST00000498412 377 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6-1095P-201ENST00000516148 108 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6-1282P-201ENST00000516735 96 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 RNU6-711P-201ENST00000517255 106 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 OR4R2P-201ENST00000530815 597 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC2.52□□□□□ -2.01
BRCA1P38398 AC078880.5-201ENST00000617845 421 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 AL360181.4-201ENST00000621752 134 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 BX649567.1-201ENST00000642071 1134 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 MTND4P35-201ENST00000604257 1375 ntBASIC2.52□□□□□ -2.01
BRCA1P38398 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
BRCA1P38398 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 AL513185.3-201ENST00000433335 1300 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.51□□□□□ -2.01
BRCA1P38398 SNORD21-201ENST00000383953 95 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 RNA5SP344-201ENST00000411081 104 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.51□□□□□ -2.01
BRCA1P38398 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 AC012497.1-201ENST00000429392 575 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 PTGES3P5-201ENST00000455109 434 ntBASIC2.51□□□□□ -2.01
BRCA1P38398 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.51□□□□□ -2.01
BRCA1P38398 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms