Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SPA17P1-201ENST00000416656 452 ntBASIC3.9□□□□□ -1.79
CIITAP33076 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.9□□□□□ -1.79
CIITAP33076 BX842559.1-201ENST00000419615 532 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AC099677.1-201ENST00000420575 175 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.9□□□□□ -1.79
CIITAP33076 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.9□□□□□ -1.79
CIITAP33076 AL353777.1-201ENST00000425552 326 ntBASIC3.9□□□□□ -1.79
CIITAP33076 RPL21P66-201ENST00000426566 466 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.9□□□□□ -1.79
CIITAP33076 AC017083.1-201ENST00000428093 483 ntBASIC3.9□□□□□ -1.79
CIITAP33076 HMGB1P12-201ENST00000438594 598 ntBASIC3.9□□□□□ -1.79
CIITAP33076 RABEPKP1-201ENST00000440529 1026 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.9□□□□□ -1.79
CIITAP33076 RPS29P31-201ENST00000446147 164 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AL353691.1-201ENST00000451332 387 ntBASIC3.9□□□□□ -1.79
CIITAP33076 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.9□□□□□ -1.79
CIITAP33076 CEACAMP4-201ENST00000457676 421 ntBASIC3.9□□□□□ -1.79
CIITAP33076 RPL21P13-201ENST00000488305 481 ntBASIC3.9□□□□□ -1.79
CIITAP33076 FCF1P3-201ENST00000496394 590 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AC114967.1-201ENST00000504890 259 ntBASIC3.9□□□□□ -1.79
CIITAP33076 AP003497.1-201ENST00000528472 562 ntBASIC3.9□□□□□ -1.79
CIITAP33076 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.9□□□□□ -1.79
CIITAP33076 ZNF192P1-203ENST00000565888 810 ntBASIC3.9□□□□□ -1.79
CIITAP33076 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.9□□□□□ -1.79
CIITAP33076 AC009159.1-201ENST00000618386 642 ntBASIC3.9□□□□□ -1.79
CIITAP33076 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
CIITAP33076 RPS4XP5-202ENST00000449995 1334 ntBASIC3.9□□□□□ -1.79
CIITAP33076 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CIITAP33076 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
CIITAP33076 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CIITAP33076 GNG5P1-201ENST00000255500 204 ntBASIC3.89□□□□□ -1.79
CIITAP33076 RNU6-989P-201ENST00000362756 107 ntBASIC3.89□□□□□ -1.79
CIITAP33076 RNU4-1-201ENST00000363925 141 ntBASIC3.89□□□□□ -1.79
CIITAP33076 RNU6-1207P-201ENST00000384343 107 ntBASIC3.89□□□□□ -1.79
CIITAP33076 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CIITAP33076 RNU6-328P-201ENST00000390887 106 ntBASIC3.89□□□□□ -1.79
CIITAP33076 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.89□□□□□ -1.79
CIITAP33076 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 AL358934.1-201ENST00000432346 324 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.89□□□□□ -1.79
CIITAP33076 RPL22P17-201ENST00000438729 315 ntBASIC3.89□□□□□ -1.79
CIITAP33076 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.89□□□□□ -1.79
CIITAP33076 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CIITAP33076 HMGB1P15-201ENST00000453854 435 ntBASIC3.89□□□□□ -1.79
CIITAP33076 VN1R17P-201ENST00000472048 1090 ntBASIC3.89□□□□□ -1.79
CIITAP33076 RPS3AP17-201ENST00000472594 777 ntBASIC3.89□□□□□ -1.79
CIITAP33076 KCTD9P5-201ENST00000504141 1170 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.89□□□□□ -1.79
CIITAP33076 AC022616.6-201ENST00000520479 119 ntBASIC3.89□□□□□ -1.79
CIITAP33076 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.89□□□□□ -1.79
CIITAP33076 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 ZNF519P2-201ENST00000557032 169 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AC034268.2-201ENST00000571784 482 ntBASIC3.89□□□□□ -1.79
CIITAP33076 MIR3118-1-201ENST00000581787 76 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AL606834.2-201ENST00000602954 668 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AL359999.1-201ENST00000604513 294 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AC011816.2-201ENST00000607089 556 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AC069200.1-201ENST00000609511 323 ntBASIC3.89□□□□□ -1.79
CIITAP33076 CR381653.2-201ENST00000624041 768 ntBASIC3.89□□□□□ -1.79
CIITAP33076 AC110994.2-201ENST00000635481 492 ntBASIC3.89□□□□□ -1.79
CIITAP33076 MTCO1P12-201ENST00000414273 1543 ntBASIC3.89□□□□□ -1.79
CIITAP33076 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.89□□□□□ -1.79
CIITAP33076 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.89□□□□□ -1.79
CIITAP33076 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CIITAP33076 AC092125.1-201ENST00000562568 1995 ntBASIC3.89□□□□□ -1.79
CIITAP33076 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
CIITAP33076 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CIITAP33076 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
CIITAP33076 SNORA63.1-201ENST00000362493 131 ntBASIC3.88□□□□□ -1.79
CIITAP33076 RNU6-600P-201ENST00000362524 99 ntBASIC3.88□□□□□ -1.79
CIITAP33076 MIR181A1-201ENST00000385026 110 ntBASIC3.88□□□□□ -1.79
CIITAP33076 CCNG1P1-201ENST00000406783 885 ntBASIC3.88□□□□□ -1.79
CIITAP33076 FCF1P10-201ENST00000407590 479 ntBASIC3.88□□□□□ -1.79
CIITAP33076 RNA5SP44-201ENST00000410446 133 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AL359704.1-201ENST00000411586 781 ntBASIC3.88□□□□□ -1.79
CIITAP33076 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.88□□□□□ -1.79
CIITAP33076 USP9YP18-201ENST00000425912 695 ntBASIC3.88□□□□□ -1.79
CIITAP33076 ISCA1P1-201ENST00000426679 387 ntBASIC3.88□□□□□ -1.79
CIITAP33076 ISCA1P6-201ENST00000427740 390 ntBASIC3.88□□□□□ -1.79
CIITAP33076 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.88□□□□□ -1.79
CIITAP33076 AL049734.2-201ENST00000441066 616 ntBASIC3.88□□□□□ -1.79
CIITAP33076 CYCSP35-201ENST00000451978 304 ntBASIC3.88□□□□□ -1.79
CIITAP33076 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.88□□□□□ -1.79
CIITAP33076 RPS4XP2-201ENST00000458402 793 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AL121769.1-201ENST00000469473 401 ntBASIC3.88□□□□□ -1.79
CIITAP33076 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
CIITAP33076 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 RNU6-718P-201ENST00000516166 105 ntBASIC3.88□□□□□ -1.79
CIITAP33076 RNU6-314P-201ENST00000516574 104 ntBASIC3.88□□□□□ -1.79
CIITAP33076 RNU6-1073P-201ENST00000517182 106 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AL133241.1-201ENST00000556832 487 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.88□□□□□ -1.79
CIITAP33076 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms