Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GTF2H2B-203ENST00000508065 1432 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 RNU6-845P-201ENST00000362578 103 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 Y_RNA.72-201ENST00000362894 103 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL3A1P02461 RNU6-244P-201ENST00000391028 104 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 PIGFP2-201ENST00000421400 651 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 MTCO2P12-201ENST00000427426 682 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AL513175.1-201ENST00000431492 780 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AL139132.1-201ENST00000431587 344 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC002486.1-201ENST00000435098 391 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 RPL7P29-201ENST00000437151 728 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 ARPC3P5-201ENST00000448802 534 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 HMGN1P18-201ENST00000457642 277 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC007182.2-201ENST00000489251 402 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.17□□□□□ -1.74
COL3A1P02461 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.17□□□□□ -1.74
COL3A1P02461 AC010486.1-201ENST00000511793 424 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.17□□□□□ -1.74
COL3A1P02461 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.17□□□□□ -1.74
COL3A1P02461 AC009977.1-201ENST00000586015 570 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC091488.1-201ENST00000604239 660 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC112191.3-201ENST00000604371 277 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.17□□□□□ -1.74
COL3A1P02461 MKKS-204ENST00000639674 192 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.17□□□□□ -1.74
COL3A1P02461 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL3A1P02461 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL3A1P02461 AC138915.3-201ENST00000562908 1389 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL3A1P02461 RNU4-44P-201ENST00000363050 141 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 RNU6-839P-201ENST00000363347 108 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 RNU6-767P-201ENST00000384132 107 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 RPS3AP36-201ENST00000398190 775 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 OR51A3P-201ENST00000413596 924 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC083875.1-201ENST00000419509 405 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AL358934.1-201ENST00000432346 324 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 MTCYBP6-201ENST00000441810 138 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.16□□□□□ -1.74
COL3A1P02461 FGF7P3-201ENST00000454645 303 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 RPL7P48-201ENST00000461513 746 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC117440.1-201ENST00000474107 571 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC104687.1-201ENST00000485829 412 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.16□□□□□ -1.74
COL3A1P02461 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.16□□□□□ -1.74
COL3A1P02461 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.16□□□□□ -1.74
COL3A1P02461 RNY4P37-201ENST00000516225 96 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.16□□□□□ -1.74
COL3A1P02461 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.16□□□□□ -1.74
COL3A1P02461 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.16□□□□□ -1.74
COL3A1P02461 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.16□□□□□ -1.74
COL3A1P02461 PSMA3P-201ENST00000555485 635 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.16□□□□□ -1.74
COL3A1P02461 VN1R80P-201ENST00000597126 338 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC069304.2-201ENST00000605154 435 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 AC116563.2-201ENST00000624751 535 ntBASIC4.16□□□□□ -1.74
COL3A1P02461 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.16□□□□□ -1.74
COL3A1P02461 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL3A1P02461 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.15□□□□□ -1.74
COL3A1P02461 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL3A1P02461 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL3A1P02461 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
COL3A1P02461 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.15□□□□□ -1.75
COL3A1P02461 FRG1BP-201ENST00000278882 761 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 RNU1-75P-201ENST00000347264 129 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 Y_RNA.86-201ENST00000363020 111 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 SNORA51.2-201ENST00000364595 132 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 SNORA44-201ENST00000384584 132 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 RPL23AP29-201ENST00000397284 453 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 RNA5SP498-201ENST00000411342 120 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 RPL7P28-201ENST00000437739 740 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 HMGB3P12-201ENST00000438745 556 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.15□□□□□ -1.75
COL3A1P02461 AL590365.1-201ENST00000450788 243 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 RPL27AP5-201ENST00000469428 449 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL3A1P02461 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.15□□□□□ -1.75
COL3A1P02461 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.15□□□□□ -1.75
COL3A1P02461 RNU6-1281P-201ENST00000516223 105 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AC090281.1-201ENST00000523019 276 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AP003034.1-201ENST00000534621 422 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AC007424.1-203ENST00000554613 687 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.15□□□□□ -1.75
COL3A1P02461 AL162413.1-201ENST00000603198 110 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.15□□□□□ -1.75
COL3A1P02461 AC008121.3-201ENST00000618726 433 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 U7.8-201ENST00000619968 63 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 AC110994.2-201ENST00000635481 492 ntBASIC4.15□□□□□ -1.75
COL3A1P02461 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
COL3A1P02461 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL3A1P02461 ZNF37BP-203ENST00000452306 1352 ntBASIC4.14□□□□□ -1.75
COL3A1P02461 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.14□□□□□ -1.75
COL3A1P02461 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms