Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 RPL12P25-201ENST00000455592 494 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC023790.1-201ENST00000482174 347 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC022493.1-201ENST00000492984 337 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 MIR449C-201ENST00000516047 92 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 PSMA3P-201ENST00000555485 635 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC005296.1-201ENST00000616145 209 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC098657.3-201ENST00000620434 263 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 PABPC1P7-201ENST00000413177 1513 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 ZNF734P-201ENST00000419494 1534 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 CCNB2P1-201ENST00000399411 1150 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 RPS3AP44-201ENST00000425466 790 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 MTND5P25-201ENST00000430499 799 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 RNU1-61P-201ENST00000516107 151 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 SUB1P1-201ENST00000524415 382 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC88BA6NC98 MTCO1P4-201ENST00000520516 1409 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 RNA5SP325-201ENST00000363756 130 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 RNU6-234P-201ENST00000365229 104 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 AL033519.2-201ENST00000403958 392 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 RPS29P1-201ENST00000465274 159 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 RNU1-104P-201ENST00000517280 175 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC88BA6NC98 MTND5P3-201ENST00000438536 1800 ntBASIC2.13□□□□□ -2.07
CCDC88BA6NC98 CENPCP1-201ENST00000533085 2578 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 RNU6-1032P-201ENST00000384100 107 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC092447.6-201ENST00000414578 210 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC88BA6NC98 PGBD4P3-201ENST00000440731 581 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC022634.1-201ENST00000520765 532 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC88BA6NC98 SNORD84-203ENST00000584275 78 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AL390240.1-201ENST00000612950 384 ntBASIC2.12□□□□□ -2.07
CCDC88BA6NC98 AC138915.1-201ENST00000565427 1685 ntBASIC2.11□□□□□ -2.07
CCDC88BA6NC98 TRGV6-201ENST00000417928 299 ntBASIC2.11□□□□□ -2.07
CCDC88BA6NC98 OR5H4P-201ENST00000510851 923 ntBASIC2.11□□□□□ -2.07
CCDC88BA6NC98 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 MIR6734-201ENST00000621166 68 ntBASIC2.11□□□□□ -2.07
CCDC88BA6NC98 AC007275.1-201ENST00000621243 671 ntBASIC2.11□□□□□ -2.07
CCDC88BA6NC98 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88BA6NC98 MIR758-201ENST00000390227 88 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC074117.2-201ENST00000417130 397 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 MED6P1-201ENST00000439659 713 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC092155.2-201ENST00000454675 477 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 NF1P3-201ENST00000457709 450 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC88BA6NC98 HMGB3P3-201ENST00000510526 400 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC008837.2-201ENST00000513076 418 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 NPM1P52-201ENST00000518264 846 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC016957.1-201ENST00000534895 309 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 OR6C73P-201ENST00000546432 358 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 MIR151B-201ENST00000584249 96 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC097468.3-201ENST00000607956 456 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 AC083806.3-201ENST00000614016 455 ntBASIC2.1□□□□□ -2.07
CCDC88BA6NC98 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC88BA6NC98 MIR222-201ENST00000384992 110 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 SRIP3-201ENST00000413200 219 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC88BA6NC98 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC88BA6NC98 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC88BA6NC98 MTCYBP35-201ENST00000503630 1137 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 AL121839.1-201ENST00000556233 1185 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC88BA6NC98 AC006065.5-201ENST00000623427 349 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 MIR203B-201ENST00000636080 86 ntBASIC2.09□□□□□ -2.07
CCDC88BA6NC98 RNU6-225P-201ENST00000384613 103 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 U3.40-201ENST00000408706 208 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 VN1R108P-201ENST00000431580 830 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AL353898.1-201ENST00000444055 238 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 snoU13.3-201ENST00000459441 104 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AL359273.1-201ENST00000510918 627 ntBASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88BA6NC98 AC011604.1-201ENST00000545978 196 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms