Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 KC877982.1-201ENST00000602313 470 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AP000403.1-201ENST00000603349 851 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC010591.1-201ENST00000603941 649 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC136601.2-201ENST00000604356 474 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC239868.4-201ENST00000608318 671 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 MIR7851-201ENST00000610611 160 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AL355493.4-201ENST00000618530 292 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 MIR7153-201ENST00000637758 57 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 RIOK3P1-201ENST00000418778 1528 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA2Q9Y261 AC008669.1-201ENST00000565823 2178 ntBASIC2.83□□□□□ -1.96
FOXA2Q9Y261 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC092435.3-201ENST00000565538 3654 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RNU1-75P-201ENST00000347264 129 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 SNORD9-201ENST00000362566 104 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RNA5SP124-201ENST00000362739 110 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RNU6-1284P-201ENST00000363701 100 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 Y_RNA.245-201ENST00000364493 95 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 MIR200C-201ENST00000384980 68 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 MIR1289-1-201ENST00000408836 144 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RPL31P12-201ENST00000422587 358 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 MTATP6P30-201ENST00000443540 664 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC073387.1-201ENST00000453261 709 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RPL23AP14-201ENST00000468281 468 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RPS4XP22-201ENST00000480755 780 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 RPS27P26-201ENST00000494583 239 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 ARL4AP2-201ENST00000507378 601 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AF131216.2-201ENST00000512316 564 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC107934.2-201ENST00000518653 310 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC034105.4-201ENST00000568304 277 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC006504.3-201ENST00000586818 523 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC121334.2-201ENST00000605387 271 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 FTX_3.1-201ENST00000610451 147 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC004223.4-201ENST00000612426 332 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC140725.3-201ENST00000616193 880 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL357559.1-201ENST00000622228 274 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC039056.2-201ENST00000622261 511 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AP002791.1-201ENST00000623291 381 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL034408.1-202ENST00000636088 415 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC010149.2-201ENST00000637608 315 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC119674.1-207ENST00000641355 633 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 API5P2-201ENST00000397055 1498 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 MFSD8-236ENST00000641509 4050 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 AL513302.2-201ENST00000562313 1842 ntBASIC2.82□□□□□ -1.96
FOXA2Q9Y261 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA2Q9Y261 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RNA5SP31-201ENST00000411144 127 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RAB9AP3-201ENST00000412737 573 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 HSFY4P-201ENST00000415994 1181 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 MTND4P20-201ENST00000424125 869 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AL365184.2-201ENST00000431139 435 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 HMGB1P27-201ENST00000431429 603 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 FCF1P1-201ENST00000432690 571 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 BX679664.1-201ENST00000434429 253 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC118469.1-201ENST00000442943 488 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RAB9AP1-201ENST00000449393 573 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RPL12P25-201ENST00000455592 494 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms