Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL390237.1-201ENST00000404226 1415 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP28Q96RU2 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 GDI2P1-201ENST00000429312 1336 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RPL9P7-201ENST00000330965 580 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 Y_RNA.77-201ENST00000362962 107 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RNU6-1249P-201ENST00000363237 111 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 U3.4-201ENST00000363352 213 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
USP28Q96RU2 BMS1P22-201ENST00000414726 313 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RPL23AP39-201ENST00000415533 405 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC098826.1-201ENST00000433943 471 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 RPL36AP33-201ENST00000450395 310 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC005297.2-201ENST00000450430 606 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.31□□□□□ -1.88
USP28Q96RU2 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 MTND4LP3-201ENST00000468320 276 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RN7SL807P-201ENST00000470923 297 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC006483.1-201ENST00000487308 313 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 HMGB1P36-201ENST00000487709 576 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.31□□□□□ -1.88
USP28Q96RU2 DSTNP2-201ENST00000504533 515 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 SNORD59.2-201ENST00000516873 68 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.31□□□□□ -1.88
USP28Q96RU2 PSMA2P1-201ENST00000526365 646 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
USP28Q96RU2 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC136618.2-201ENST00000575091 400 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 SNORD84-203ENST00000584275 78 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 MIR4506-201ENST00000584693 77 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 RSL24D1P11-201ENST00000591045 491 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AC119751.7-201ENST00000600494 245 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AL451064.1-201ENST00000607718 471 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC239868.4-201ENST00000608318 671 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC103710.4-201ENST00000609301 899 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC090115.4-201ENST00000609970 188 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AL158063.1-201ENST00000615349 536 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 AC025588.4-201ENST00000615802 908 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 MIR7844-201ENST00000616161 122 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 MIR6075-201ENST00000620782 95 ntBASIC3.31□□□□□ -1.88
USP28Q96RU2 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.31□□□□□ -1.88
USP28Q96RU2 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP28Q96RU2 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.31□□□□□ -1.88
USP28Q96RU2 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP28Q96RU2 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.3□□□□□ -1.88
USP28Q96RU2 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
USP28Q96RU2 RNU6-821P-201ENST00000390995 107 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 SAR1AP2-201ENST00000392696 594 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 RPS3AP26-201ENST00000398259 784 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 RPS15AP38-201ENST00000413110 372 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 MORF4L1P6-201ENST00000418771 268 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 RPL7P46-201ENST00000425129 740 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 UBE2FP3-201ENST00000436366 524 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 LSM1P1-201ENST00000438629 273 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 MTND1P30-201ENST00000441241 901 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.3□□□□□ -1.88
USP28Q96RU2 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.3□□□□□ -1.88
USP28Q96RU2 BX322784.1-201ENST00000455793 1077 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 BX510359.1-201ENST00000456973 237 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 RPL32P34-201ENST00000486380 400 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.3□□□□□ -1.88
USP28Q96RU2 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.3□□□□□ -1.88
USP28Q96RU2 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.3□□□□□ -1.88
USP28Q96RU2 RNA5SP76-201ENST00000516277 87 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.3□□□□□ -1.88
USP28Q96RU2 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.3□□□□□ -1.88
USP28Q96RU2 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.3□□□□□ -1.88
USP28Q96RU2 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.3□□□□□ -1.88
USP28Q96RU2 HSPE1P3-201ENST00000559254 309 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.3□□□□□ -1.88
USP28Q96RU2 XIAPP1-201ENST00000603162 600 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 AL133393.1-201ENST00000603277 287 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 AC092354.1-201ENST00000606057 376 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.3□□□□□ -1.88
USP28Q96RU2 AC069200.1-201ENST00000609511 323 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.3□□□□□ -1.88
USP28Q96RU2 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.3□□□□□ -1.88
USP28Q96RU2 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP28Q96RU2 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
USP28Q96RU2 AC092104.1-201ENST00000497346 1441 ntBASIC3.29□□□□□ -1.88
USP28Q96RU2 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP28Q96RU2 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP28Q96RU2 RNU6-462P-201ENST00000362659 105 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms