Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC083760.1-201ENST00000589621 670 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AL161734.1-201ENST00000609720 557 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 AC026422.1-201ENST00000623961 452 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS39Q96JC1 AP003399.1-201ENST00000637534 361 ntBASIC2.96□□□□□ -1.94
VPS39Q96JC1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS39Q96JC1 CR848007.1-201ENST00000442354 1699 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AP000776.1-201ENST00000530032 1663 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 Y_RNA.234-201ENST00000364409 97 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 Y_RNA.311-201ENST00000365068 96 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL356057.2-201ENST00000403318 432 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL451074.5-201ENST00000415894 435 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 MTCO2P17-201ENST00000424336 677 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL358075.3-201ENST00000426289 226 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 OR4K11P-201ENST00000431829 904 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC084290.1-201ENST00000434995 374 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 RPS25P9-201ENST00000435591 252 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC009296.1-201ENST00000443146 155 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 WASF1P1-201ENST00000447560 1131 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 RPS15AP27-201ENST00000449183 343 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS39Q96JC1 RPL23AP70-201ENST00000483361 460 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC006499.2-201ENST00000513470 337 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 RNU6-311P-201ENST00000516224 102 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 MTCO2P15-201ENST00000532655 656 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC034105.3-201ENST00000565294 442 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 MIR5004-201ENST00000579078 107 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 OR4K7P-201ENST00000580232 945 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC005498.1-201ENST00000592125 465 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC007349.4-201ENST00000608114 532 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL139418.1-201ENST00000613613 177 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC109809.1-201ENST00000619665 545 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AP000484.1-201ENST00000620067 1252 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 AC231657.1-201ENST00000624313 397 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS39Q96JC1 AL079343.1-201ENST00000572358 1771 ntBASIC2.95□□□□□ -1.94
VPS39Q96JC1 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AL022578.1-201ENST00000439330 1433 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 RNU5E-8P-201ENST00000363502 116 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 SNORD46.1-201ENST00000364139 104 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 SNORA71.1-201ENST00000364523 117 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 RNU6-952P-201ENST00000391164 108 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 RNU6-757P-201ENST00000410334 100 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AL008987.1-201ENST00000415528 237 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC092427.1-202ENST00000430569 476 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 DDX3P2-201ENST00000446138 111 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 EEF1E1P1-201ENST00000446998 430 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 RNU7-136P-201ENST00000458819 69 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 SNORD121B-201ENST00000458838 81 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 HSPE1P23-201ENST00000509838 286 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 MTND4P33-201ENST00000556706 766 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC074050.1-201ENST00000563247 211 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC022662.1-201ENST00000580252 331 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC012119.1-201ENST00000603184 222 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AL158042.1-201ENST00000605338 460 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC093838.1-201ENST00000613014 469 ntBASIC2.94□□□□□ -1.94
VPS39Q96JC1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS39Q96JC1 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS39Q96JC1 MIR1284-201ENST00000408337 120 ntBASIC2.93□□□□□ -1.94
VPS39Q96JC1 AC092047.1-201ENST00000424997 240 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms