Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 USP9YP7-201ENST00000436723 430 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 USP9YP32-201ENST00000452432 430 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RPS24P6-201ENST00000452670 400 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC104164.2-201ENST00000496953 495 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC146944.2-203ENST00000502493 354 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC139495.1-202ENST00000513164 354 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC093303.1-201ENST00000514549 295 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RNA5SP143-201ENST00000516936 115 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC027309.2-201ENST00000520566 192 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AP000889.2-201ENST00000532684 490 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 MIR4680-201ENST00000580906 66 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AP001330.4-201ENST00000604350 154 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC023509.5-201ENST00000617434 807 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 OR1S2-201ENST00000302592 978 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 RNU5E-1-201ENST00000362477 120 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 RNU1-35P-201ENST00000362782 153 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 Y_RNA.148-201ENST00000363557 117 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 SNORA70E-201ENST00000384492 135 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 RPL7P25-201ENST00000404151 721 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 MIR320C1-201ENST00000408566 88 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 RNU2-9P-201ENST00000410194 145 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 MIR1911-201ENST00000410783 80 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 AL445584.1-201ENST00000431451 330 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 RSU1P2-202ENST00000437884 485 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 MTCO3P10-201ENST00000455912 772 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 NF1P3-201ENST00000457709 450 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC079804.1-201ENST00000461922 436 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 RPS27P23-201ENST00000487608 251 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC107222.1-201ENST00000510899 637 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 SMURF2P1-201ENST00000514992 481 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 RNU6-988P-201ENST00000519081 107 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 AP005902.1-201ENST00000521358 186 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 IFITM8P-201ENST00000522529 394 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC006064.5-201ENST00000541782 248 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 Z84480.1-201ENST00000605131 311 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 RNA5SP108-201ENST00000605921 117 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 MIR6864-201ENST00000617935 70 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC009237.17-201ENST00000618111 748 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 MIR4496-201ENST00000635896 61 ntBASIC4.3□□□□□ -1.72
CHFRQ96EP1 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
CHFRQ96EP1 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHFRQ96EP1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms