Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 AC007435.1-201ENST00000421086 415 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 NDUFB4P7-201ENST00000423198 363 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 ARPC3P1-201ENST00000437218 533 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 RPS27AP9-201ENST00000477681 438 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 RPL23AP70-201ENST00000483361 460 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 RPS15AP34-201ENST00000487776 387 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 SRIP1-201ENST00000489235 288 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 RN7SKP24-201ENST00000515888 284 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 ELOCP31-201ENST00000540463 467 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 HMGB1P14-201ENST00000557424 591 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 ACTR3BP3-201ENST00000565577 979 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AMZ2P1-203ENST00000565833 850 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC103810.1-201ENST00000579873 453 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 MIR5194-201ENST00000582634 120 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC024060.1-201ENST00000607052 494 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC093673.2-201ENST00000609674 331 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.54□□□□□ -2
ECHDC3Q96DC8 U4.3-201ENST00000621047 82 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC103798.2-201ENST00000624292 632 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC126544.2-201ENST00000625174 749 ntBASIC2.54□□□□□ -2
ECHDC3Q96DC8 AC012321.1-201ENST00000561622 1588 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
ECHDC3Q96DC8 FTLP6-201ENST00000355274 422 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 RNA5SP456-201ENST00000364002 114 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 RNU6-270P-201ENST00000364131 105 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
ECHDC3Q96DC8 SNORA67.4-201ENST00000384688 142 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 MIR1290-201ENST00000408735 78 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AL161449.1-201ENST00000414531 1199 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 MTATP6P27-201ENST00000416987 621 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 TRBV26OR9-2-201ENST00000432077 293 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 MTCYBP45-201ENST00000435243 565 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC090774.1-201ENST00000435925 246 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AL592447.1-201ENST00000447592 540 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 snoU13.28-201ENST00000459235 104 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AL049714.1-201ENST00000466686 347 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC008427.1-201ENST00000503102 655 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC114981.1-201ENST00000503897 678 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC114322.1-201ENST00000506771 926 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 RNU6-1225P-201ENST00000516336 65 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 RN7SKP40-201ENST00000517211 242 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.53□□□□□ -2
ECHDC3Q96DC8 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC068620.3-201ENST00000602749 560 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 BX664608.1-201ENST00000610519 487 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AL450472.3-201ENST00000615578 367 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 MIR6130-201ENST00000619419 109 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.53□□□□□ -2
ECHDC3Q96DC8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.53□□□□□ -2
ECHDC3Q96DC8 ZNF519P1-201ENST00000449011 1626 ntBASIC2.53□□□□□ -2
ECHDC3Q96DC8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
ECHDC3Q96DC8 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.53□□□□□ -2.01
ECHDC3Q96DC8 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 CDR1-202ENST00000625883 1485 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 snoZ40.1-201ENST00000364540 72 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 RNU6-76P-201ENST00000384060 104 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 Y_RNA.548-201ENST00000384656 105 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 RNU2-42P-201ENST00000410697 113 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC068533.2-201ENST00000411872 306 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 MTND4P3-201ENST00000417829 541 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 PTP4A1P7-201ENST00000423476 514 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AL365496.1-201ENST00000426885 215 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 TAAR7P-201ENST00000436141 242 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC147055.4-201ENST00000504399 745 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 HMGB1P28-201ENST00000507778 552 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC114781.4-201ENST00000513707 639 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC093677.1-201ENST00000514414 678 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC109329.2-201ENST00000519658 482 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 AC103783.1-201ENST00000520506 373 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 SLC2A13P1-201ENST00000531560 322 ntBASIC2.52□□□□□ -2.01
ECHDC3Q96DC8 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms