Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-461P-201ENST00000364195 107 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RN7SKP226-201ENST00000364912 300 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-298P-201ENST00000390888 96 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AL122016.1-201ENST00000403365 367 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-584P-201ENST00000410350 95 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RNU4-47P-201ENST00000410876 114 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC096664.2-201ENST00000411843 406 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC106883.1-201ENST00000418805 562 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 NANOGNBP1-201ENST00000448444 480 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 BX322784.1-201ENST00000455793 1077 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC021382.1-201ENST00000483523 359 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC096571.1-202ENST00000506634 735 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC008716.1-201ENST00000511084 513 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 MIR5680-201ENST00000577577 84 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 MIR4276-201ENST00000584832 70 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC005000.2-201ENST00000605468 310 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 YPEL5P2-201ENST00000605553 359 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AL449363.1-201ENST00000617815 186 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 AC106754.1-201ENST00000562632 1513 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-223P-201ENST00000362830 107 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 RNA5SP274-201ENST00000410484 108 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 GTF2IP3-201ENST00000433887 494 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 RPL35AP22-201ENST00000436855 335 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC008155.2-201ENST00000464337 397 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 COX6CP8-201ENST00000522620 226 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC002545.1-201ENST00000592511 181 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 CKS1BP3-201ENST00000600888 237 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC073657.2-201ENST00000605661 303 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC135507.1-201ENST00000607214 561 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC123767.1-202ENST00000620407 817 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 MIR8057-201ENST00000620957 69 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AL078595.3-201ENST00000623815 1166 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AC013437.2-201ENST00000639587 677 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 OR5BR1P-201ENST00000524992 1330 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 AL138713.1-201ENST00000624026 2130 ntBASIC2.86□□□□□ -1.95
ZNF540Q8NDQ6 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 VTRNA1-1-201ENST00000363120 99 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 SNORA23-201ENST00000365128 182 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 TAS2R15P-201ENST00000390674 928 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 SNORA40.2-201ENST00000390847 128 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-952P-201ENST00000391164 108 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-516P-201ENST00000411381 104 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL512649.1-201ENST00000428997 581 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC007919.1-201ENST00000429380 217 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 194.5 ms