Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR3936-201ENST00000584304 110 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 SDR42E1P1-201ENST00000611327 477 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 U73479.1-201ENST00000618062 168 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 IRF5P1-201ENST00000504852 2164 ntBASIC4.71□□□□□ -1.65
UBE3DQ7Z6J8 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 RNA5SP52-201ENST00000362448 134 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 RNA5SP305-201ENST00000362665 119 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SNORA73.1-201ENST00000363107 205 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-472P-201ENST00000384299 107 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.485-201ENST00000384395 102 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SNORA70E-201ENST00000384492 135 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AL357515.1-201ENST00000402967 542 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 RNA5SP296-201ENST00000410523 111 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 RN7SKP213-201ENST00000410746 298 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC093162.1-201ENST00000419682 124 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 DYNLT3P2-201ENST00000442517 295 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 PRDX3P3-201ENST00000447765 522 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC022447.4-201ENST00000504053 364 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 FTH1P9-201ENST00000513251 355 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC067852.4-201ENST00000590314 478 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC015967.1-201ENST00000619893 476 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 MIR6719-201ENST00000622428 87 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 AP002799.1-201ENST00000623552 423 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 STX3-208ENST00000641815 3236 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 PRO1804-201ENST00000623780 2050 ntBASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
UBE3DQ7Z6J8 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC112198.2-201ENST00000426589 6996 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.151-201ENST00000363566 112 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RNA5SP507-201ENST00000363603 121 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.461-201ENST00000384263 103 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.551-201ENST00000384661 102 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AP000580.1-201ENST00000404439 358 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RPL7AP73-201ENST00000413490 353 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RPS15AP6-201ENST00000420703 385 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 ARL5AP4-201ENST00000430731 512 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AL590399.6-201ENST00000446396 307 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 FTH1P25-201ENST00000447665 469 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RPL29P29-201ENST00000448725 423 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-1132P-201ENST00000459214 107 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RN7SL319P-201ENST00000480656 221 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC007686.1-201ENST00000488511 463 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-840P-201ENST00000517275 65 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 IGHV3-76-201ENST00000522465 295 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC040926.1-201ENST00000530195 238 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC009643.1-201ENST00000532030 391 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 HMGN2P6-201ENST00000551091 273 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC125232.2-201ENST00000592457 143 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AL160281.1-201ENST00000605307 311 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 MIR15A-201ENST00000607334 83 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC078938.1-201ENST00000620993 318 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AL031601.2-202ENST00000622650 282 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 AC018445.2-201ENST00000622987 260 ntBASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms