Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL078599.1-201ENST00000402075 293 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 MRPL35P1-201ENST00000404272 572 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AL603910.2-201ENST00000407268 136 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RNA5SP36-201ENST00000410197 133 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RPL21P90-201ENST00000415692 466 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC099677.1-201ENST00000420575 175 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RPEP5-201ENST00000441137 268 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RPL7AP61-201ENST00000443410 636 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 TPT1P12-201ENST00000448968 492 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RPL21P41-201ENST00000459863 264 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RN7SL354P-201ENST00000469282 294 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC005798.1-201ENST00000513715 387 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC021006.3-201ENST00000530771 192 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC067852.3-201ENST00000589177 561 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC005344.1-201ENST00000613391 459 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 RNU1-74P-201ENST00000384108 171 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 MIR600-201ENST00000385007 98 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 MIR105-1-201ENST00000385222 81 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 RNU6-121P-201ENST00000410525 99 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 AC097484.1-201ENST00000471148 389 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 MIR4270-201ENST00000581799 70 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 MIR4691-201ENST00000583764 85 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 AC004832.4-201ENST00000608952 331 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SH3RF1Q7Z6J0 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 MAPK10-338ENST00000641647 3362 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 RNU6-249P-201ENST00000363016 102 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 RNU2-33P-201ENST00000410344 192 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 REREP1Y-201ENST00000422655 198 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 REREP2Y-201ENST00000439103 200 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AC098869.1-201ENST00000481627 292 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 SNORA25.14-201ENST00000516481 132 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 RN7SKP82-201ENST00000516786 223 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AC091144.1-201ENST00000519573 138 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 HNRNPCP4-201ENST00000571636 900 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AL031601.2-202ENST00000622650 282 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 AC027228.2-201ENST00000567141 2154 ntBASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SH3RF1Q7Z6J0 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 AC005183.1-201ENST00000603687 1979 ntBASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SH3RF1Q7Z6J0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms