Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.49□□□□□ -1.85
USP43Q70EL4 BNIP3P10-201ENST00000605360 577 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AL133255.1-201ENST00000606374 441 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC011816.2-201ENST00000607089 556 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AP001521.1-201ENST00000609150 300 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC103710.4-201ENST00000609301 899 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC008250.2-201ENST00000615261 205 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 MIR8058-201ENST00000615737 89 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC231657.1-201ENST00000624313 397 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC091152.2-201ENST00000591628 2569 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP43Q70EL4 AP001148.1-201ENST00000624124 2359 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC006378.2-201ENST00000623178 2476 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP43Q70EL4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USP43Q70EL4 SNORA60-201ENST00000362396 134 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 Y_RNA.86-201ENST00000363020 111 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 RNU6-254P-201ENST00000363377 107 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 Y_RNA.146-201ENST00000363549 102 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 Y_RNA.296-201ENST00000364930 108 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 Y_RNA.409-201ENST00000383990 98 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 PTMAP2-201ENST00000397627 327 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 RNA5SP44-201ENST00000410446 133 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC073264.1-201ENST00000411508 416 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC009310.1-201ENST00000414414 451 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
USP43Q70EL4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC009961.2-201ENST00000435771 251 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 MTND6P13-201ENST00000443510 523 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 GAPDHP17-201ENST00000449858 1001 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC097493.1-201ENST00000463958 372 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC023598.1-201ENST00000472521 361 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC092451.1-201ENST00000480211 153 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 ACTR3P3-201ENST00000480448 893 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 PCBP2P3-201ENST00000509726 843 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC105914.1-201ENST00000511798 226 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC026412.2-201ENST00000512270 1075 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 RNU2-58P-201ENST00000516403 183 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 RNA5SP519-201ENST00000516480 119 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 Y_RNA.693-201ENST00000516641 110 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AF279873.1-201ENST00000523393 313 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC008489.1-201ENST00000524271 483 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AP005597.4-201ENST00000526762 229 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.48□□□□□ -1.85
USP43Q70EL4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC037471.2-201ENST00000564941 598 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC025678.1-201ENST00000567861 338 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC137800.2-201ENST00000574375 120 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC097468.3-201ENST00000607956 456 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 MIR6867-201ENST00000610636 67 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC006504.8-201ENST00000621046 635 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC068880.5-201ENST00000624331 290 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 AC138649.5-201ENST00000637456 137 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP43Q70EL4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.48□□□□□ -1.85
USP43Q70EL4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP43Q70EL4 MTND5P1-201ENST00000445440 1375 ntBASIC3.48□□□□□ -1.85
USP43Q70EL4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP43Q70EL4 SRP72P2-201ENST00000344851 1979 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP43Q70EL4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP43Q70EL4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
USP43Q70EL4 MIR372-201ENST00000362225 67 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.47□□□□□ -1.85
USP43Q70EL4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
USP43Q70EL4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.47□□□□□ -1.85
USP43Q70EL4 RNU6-877P-201ENST00000383868 107 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 RNU6-1103P-201ENST00000384150 107 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 RNU6-463P-201ENST00000384340 107 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
USP43Q70EL4 RNA5SP171-201ENST00000391071 115 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 RNU6ATAC-201ENST00000408749 126 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 RNU6-908P-201ENST00000410160 94 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 Y_RNA.608-201ENST00000410647 95 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 ZNF90P2-204ENST00000419323 1075 ntBASIC3.47□□□□□ -1.85
USP43Q70EL4 NCOR1P3-201ENST00000420479 303 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms