Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC109464.2-201ENST00000510242 943 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC010486.1-201ENST00000511793 424 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 SNORA31.8-201ENST00000516327 108 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 RNU2-58P-201ENST00000516403 183 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MIR3146-201ENST00000580367 79 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC103987.3-201ENST00000582071 292 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MIR4325-201ENST00000583049 90 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 HMGN1P30-201ENST00000589286 268 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL451007.1-201ENST00000595491 289 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 CKS1BP3-201ENST00000600888 237 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL451064.1-201ENST00000607718 471 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC091304.9-201ENST00000612091 226 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 uc_338.12-201ENST00000616344 181 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC112204.3-201ENST00000623822 332 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC019226.1-201ENST00000625666 515 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 IPO8P1-201ENST00000455509 3109 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC007685.1-201ENST00000329806 452 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RNU6-1119P-201ENST00000384349 108 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 SNORD116-4-201ENST00000384733 96 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 U3.19-201ENST00000390893 196 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 DEFB108C-201ENST00000400154 252 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 HSPE1P26-201ENST00000405341 275 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL663109.1-201ENST00000411498 844 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL031667.1-201ENST00000440222 725 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL162389.1-201ENST00000449233 177 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RPL23AP31-201ENST00000456160 467 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 CFTRP1-201ENST00000456646 183 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RNU7-170P-201ENST00000459303 61 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RPL23AP14-201ENST00000468281 468 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC082651.2-201ENST00000496833 166 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RNU2-27P-201ENST00000516185 142 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 Y_RNA.672-201ENST00000516289 104 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 SNORA31.22-201ENST00000517204 135 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC125611.2-201ENST00000551907 647 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 MIR3118-1-201ENST00000581787 76 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC108747.1-201ENST00000609508 535 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC245517.5-201ENST00000611529 162 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC090970.3-201ENST00000612566 866 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AL592295.2-201ENST00000612578 206 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 HULC.1-201ENST00000612720 240 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 AC008250.2-201ENST00000615261 205 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 FARSBP1-201ENST00000435808 1778 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 UBE3AP2-201ENST00000429033 2259 ntBASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.55□□□□□ -1.84
COL28A1Q2UY09 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AL021368.2-201ENST00000606125 5352 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC005832.2-201ENST00000538921 1430 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC138915.3-201ENST00000562908 1389 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 RNU6-348P-201ENST00000384386 107 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 RPL7P60-201ENST00000397636 735 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 RNU2-8P-201ENST00000410727 190 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 SPA17P1-201ENST00000416656 452 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms