Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SNHG22-203ENST00000617833 660 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SOX4Q06945 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX4Q06945 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SOX4Q06945 AC233263.6-201ENST00000631132 1963 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AC010615.1-201ENST00000594254 1764 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SOX4Q06945 AL731566.1-201ENST00000620490 1937 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SOX4Q06945 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX4Q06945 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SOX4Q06945 AC009951.1-201ENST00000623674 2614 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX4Q06945 ZFRP1-201ENST00000457579 2970 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SOX4Q06945 AC133552.1-201ENST00000569988 4007 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX4Q06945 SNORD14.1-201ENST00000365609 90 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 RNU6-214P-201ENST00000384130 107 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 MIR659-201ENST00000384963 97 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 RN7SKP267-201ENST00000410381 285 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 RNU6-293P-201ENST00000411259 106 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 EIF4HP2-201ENST00000424380 563 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AC097713.2-201ENST00000430199 356 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX4Q06945 H2AFZP5-201ENST00000446960 382 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 SNORD127-201ENST00000458892 86 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AC007016.1-201ENST00000512110 244 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX4Q06945 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX4Q06945 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX4Q06945 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX4Q06945 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX4Q06945 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX4Q06945 AL355810.1-201ENST00000614629 552 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AL359547.2-201ENST00000615810 418 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 AC005005.4-201ENST00000623789 16698 ntBASIC5.03□□□□□ -1.6
SOX4Q06945 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX4Q06945 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX4Q06945 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX4Q06945 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX4Q06945 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX4Q06945 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SOX4Q06945 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SOX4Q06945 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SOX4Q06945 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SOX4Q06945 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX4Q06945 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX4Q06945 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SOX4Q06945 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX4Q06945 AC021146.4-201ENST00000309229 279 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 RNU1-35P-201ENST00000362782 153 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 RNU6-842P-201ENST00000384269 107 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 MIR129-1-201ENST00000384972 72 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 U3.22-201ENST00000391120 215 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 RNA5SP296-201ENST00000410523 111 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX4Q06945 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX4Q06945 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX4Q06945 AC010655.1-201ENST00000449336 292 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 RFPL4AP5-201ENST00000514977 504 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 IGHV3-76-201ENST00000522465 295 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.02□□□□□ -1.61
SOX4Q06945 AC025423.5-201ENST00000550230 219 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX4Q06945 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX4Q06945 SUB1P3-201ENST00000564581 315 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 MIR3128-201ENST00000581957 66 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 MIR6798-201ENST00000612887 67 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 U3.53-201ENST00000628922 216 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SOX4Q06945 AC104623.2-202ENST00000623477 4002 ntBASIC5.02□□□□□ -1.61
SOX4Q06945 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SOX4Q06945 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SOX4Q06945 AL137003.2-201ENST00000606924 2538 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SOX4Q06945 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX4Q06945 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX4Q06945 Y_RNA.222-201ENST00000364264 102 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 Y_RNA.314-201ENST00000365114 102 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 RNU6-701P-201ENST00000384059 107 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 MT-TW-201ENST00000387382 68 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 AL139039.1-201ENST00000401900 692 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 RPS4XP7-201ENST00000406274 780 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 MIR1302-6-201ENST00000408466 90 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 RPL31P2-201ENST00000413849 377 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 PSMA2P3-201ENST00000429685 675 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX4Q06945 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX4Q06945 RPL9P32-201ENST00000464118 620 ntBASIC5.01□□□□□ -1.61
SOX4Q06945 RN7SL481P-201ENST00000477764 299 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms