Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CYCSP29-201ENST00000533731 318 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AL121576.1-201ENST00000556055 276 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA4Q00056 MIR3138-201ENST00000585238 82 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AL161729.3-201ENST00000603533 673 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 IGHV3-29-201ENST00000604817 344 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC083809.1-201ENST00000615051 472 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 uc_338.15-201ENST00000615470 191 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXA4Q00056 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 RNU6-1252P-201ENST00000363054 104 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 Y_RNA.138-201ENST00000363462 102 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 Y_RNA.384-201ENST00000383909 102 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RNU6-356P-201ENST00000384140 107 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RNU6-837P-201ENST00000391056 108 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RNU6-550P-201ENST00000391057 101 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RPS4XP9-201ENST00000405151 780 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 NDUFS5P1-201ENST00000405668 289 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MIR1302-11-201ENST00000408051 138 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MIR1302-9-201ENST00000408365 138 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MIR1302-10-201ENST00000408734 138 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 SNORA74C-2-201ENST00000411179 201 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA4Q00056 RPS12P23-201ENST00000419579 400 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 NCOR1P3-201ENST00000420479 303 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 PPP1R11P2-201ENST00000423543 382 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MTCO2P12-201ENST00000427426 682 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 HMGB3P9-201ENST00000441799 583 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC009963.2-201ENST00000453431 138 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 RN7SL817P-201ENST00000480777 288 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA4Q00056 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXA4Q00056 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA4Q00056 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC093012.1-202ENST00000549403 582 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL352979.3-201ENST00000553515 247 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RPL21P7-201ENST00000557463 483 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RPL23AP97-201ENST00000568955 471 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 RPL23AP84-201ENST00000571193 464 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA4Q00056 AC023575.1-201ENST00000580510 358 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MIR3942-201ENST00000585264 109 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 BNIP3P25-201ENST00000596023 559 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.6-201ENST00000603753 252 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.11-201ENST00000604059 253 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC008162.1-201ENST00000604718 254 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.1-201ENST00000604752 252 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.5-201ENST00000605253 252 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.12-201ENST00000605291 253 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.8-201ENST00000605353 252 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL670379.7-201ENST00000605823 252 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 HMGN2P28-201ENST00000606102 262 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 MIR1302-2-201ENST00000607096 138 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 Z82243.1-201ENST00000609432 473 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL021997.2-201ENST00000615674 271 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AC126177.8-201ENST00000618339 1015 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 AL357559.1-201ENST00000622228 274 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA4Q00056 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 AL592437.2-201ENST00000421655 2434 ntBASIC3.63□□□□□ -1.83
HOXA4Q00056 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA4Q00056 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA4Q00056 TPTE2P4-201ENST00000258589 1605 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC090229.1-201ENST00000590983 1609 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HOXA4Q00056 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC026951.1-201ENST00000559530 2459 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 Y_RNA.414-201ENST00000384011 101 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 Y_RNA.530-201ENST00000384587 101 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC110754.1-201ENST00000399740 601 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RNU2-43P-201ENST00000410306 190 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 ARL5AP1-201ENST00000418991 388 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA4Q00056 C4BPAP2-201ENST00000428434 478 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms