Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AL049830.2-201ENST00000480072 201 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC004924.1-201ENST00000480160 781 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 RPL9P33-201ENST00000484311 566 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC105137.1-201ENST00000484355 562 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX2-1P43699 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX2-1P43699 RNU6-840P-201ENST00000517275 65 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX2-1P43699 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AP003730.1-201ENST00000524605 285 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX2-1P43699 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX2-1P43699 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AL355836.1-201ENST00000555951 870 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AL391840.1-201ENST00000571144 367 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 MIR5047-201ENST00000579212 100 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AC008277.2-201ENST00000605196 797 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 ARF4P1-201ENST00000605447 541 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX2-1P43699 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 U4.5-201ENST00000617137 123 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 SNHG22-203ENST00000617833 660 ntBASIC3.05□□□□□ -1.92
NKX2-1P43699 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX2-1P43699 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
NKX2-1P43699 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
NKX2-1P43699 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX2-1P43699 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX2-1P43699 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 RNA5SP97-201ENST00000365006 84 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 SNORA56-201ENST00000383966 129 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AL590704.1-201ENST00000402856 794 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 RPL21P24-201ENST00000413752 448 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 RPL17P36-201ENST00000420302 549 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC019097.1-201ENST00000424783 735 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AL691449.1-201ENST00000426570 421 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 NEK4P1-201ENST00000433383 879 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AL358832.1-201ENST00000497800 389 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC107401.1-201ENST00000503426 685 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.04□□□□□ -1.92
NKX2-1P43699 RNA5SP164-201ENST00000516533 110 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 Vault.3-201ENST00000516676 95 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC245505.1-201ENST00000556398 224 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC005951.1-201ENST00000576706 485 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 MIR3167-201ENST00000579623 85 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX2-1P43699 MIR3138-201ENST00000585238 82 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AF038458.1-201ENST00000588406 262 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AL391813.2-201ENST00000609113 322 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AC108747.1-201ENST00000609508 535 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 AC009570.1-201ENST00000609599 745 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 SDR42E1P2-201ENST00000614861 481 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 AF117829.1-206ENST00000621883 3802 ntBASIC3.04□□□□□ -1.92
NKX2-1P43699 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX2-1P43699 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX2-1P43699 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX2-1P43699 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
NKX2-1P43699 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
NKX2-1P43699 RN7SKP226-201ENST00000364912 300 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 RNU6-1215P-201ENST00000384441 102 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 SNORA1.3-201ENST00000384676 136 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 MIR181A1-201ENST00000385026 110 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 RNA5SP424-201ENST00000390988 115 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX2-1P43699 SNORA11B-201ENST00000408175 129 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 Y_RNA.619-201ENST00000410951 90 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 RPL31P12-201ENST00000422587 358 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
NKX2-1P43699 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX2-1P43699 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NKX2-1P43699 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX2-1P43699 USP9YP28-201ENST00000435142 589 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 NDUFB4P6-201ENST00000436819 366 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 NUTF2P3-201ENST00000448540 384 ntBASIC3.03□□□□□ -1.92
NKX2-1P43699 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms