Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC009878.1-201ENST00000621819 340 ntBASIC3.07□□□□□ -1.92
SOX3P41225 AL603839.4-201ENST00000624658 1005 ntBASIC3.07□□□□□ -1.92
SOX3P41225 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX3P41225 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SOX3P41225 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX3P41225 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.07□□□□□ -1.92
SOX3P41225 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX3P41225 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SOX3P41225 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SOX3P41225 SNORA51.2-201ENST00000364595 132 ntBASIC3.06□□□□□ -1.92
SOX3P41225 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 Y_RNA.553-201ENST00000384670 102 ntBASIC3.06□□□□□ -1.92
SOX3P41225 U3.19-201ENST00000390893 196 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RNU6-882P-201ENST00000391025 103 ntBASIC3.06□□□□□ -1.92
SOX3P41225 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SOX3P41225 CCNG1P1-201ENST00000406783 885 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RNU2-43P-201ENST00000410306 190 ntBASIC3.06□□□□□ -1.92
SOX3P41225 Y_RNA.598-201ENST00000410480 95 ntBASIC3.06□□□□□ -1.92
SOX3P41225 HMGB3P23-201ENST00000414981 585 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AC016907.1-201ENST00000419483 435 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 OR4K11P-201ENST00000431829 904 ntBASIC3.06□□□□□ -1.92
SOX3P41225 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.06□□□□□ -1.92
SOX3P41225 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.06□□□□□ -1.92
SOX3P41225 HMGB3P11-201ENST00000440127 604 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RPS3AP12-201ENST00000443616 753 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.06□□□□□ -1.92
SOX3P41225 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 AC055855.1-201ENST00000489563 579 ntBASIC3.06□□□□□ -1.92
SOX3P41225 MTCO1P9-201ENST00000505577 1534 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC010424.1-201ENST00000506336 297 ntBASIC3.06□□□□□ -1.92
SOX3P41225 KLHL2P1-201ENST00000508691 521 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.06□□□□□ -1.92
SOX3P41225 RNU6-1073P-201ENST00000517182 106 ntBASIC3.06□□□□□ -1.92
SOX3P41225 SCARNA20.6-201ENST00000517251 106 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RPL12P22-201ENST00000519073 490 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.06□□□□□ -1.92
SOX3P41225 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SOX3P41225 AP000873.5-201ENST00000533906 236 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.06□□□□□ -1.92
SOX3P41225 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 AC135279.1-201ENST00000543493 504 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 ZNF519P3-201ENST00000557158 1032 ntBASIC3.06□□□□□ -1.92
SOX3P41225 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.06□□□□□ -1.92
SOX3P41225 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.06□□□□□ -1.92
SOX3P41225 AC015917.1-201ENST00000579654 510 ntBASIC3.06□□□□□ -1.92
SOX3P41225 MIR5195-201ENST00000583555 115 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AP001429.1-201ENST00000602568 530 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.06□□□□□ -1.92
SOX3P41225 AC112191.3-201ENST00000604371 277 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL022099.1-201ENST00000604551 712 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 AL355472.4-201ENST00000610233 626 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL442067.2-201ENST00000614033 363 ntBASIC3.06□□□□□ -1.92
SOX3P41225 MIR7112-201ENST00000616126 65 ntBASIC3.06□□□□□ -1.92
SOX3P41225 XIST_intron.1-201ENST00000619444 68 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AL356321.1-201ENST00000621360 228 ntBASIC3.06□□□□□ -1.92
SOX3P41225 AC009268.2-201ENST00000621925 457 ntBASIC3.06□□□□□ -1.92
SOX3P41225 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX3P41225 AP001148.1-201ENST00000624124 2359 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC116096.1-201ENST00000566804 2314 ntBASIC3.05□□□□□ -1.92
SOX3P41225 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SOX3P41225 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX3P41225 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX3P41225 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SOX3P41225 RNU6-754P-201ENST00000391166 107 ntBASIC3.05□□□□□ -1.92
SOX3P41225 BTF3L4P1-201ENST00000413813 468 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC063979.1-201ENST00000415539 377 ntBASIC3.05□□□□□ -1.92
SOX3P41225 SSXP9-201ENST00000417503 292 ntBASIC3.05□□□□□ -1.92
SOX3P41225 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 AC233728.2-201ENST00000425348 757 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL353777.1-201ENST00000425552 326 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC079780.1-201ENST00000428259 207 ntBASIC3.05□□□□□ -1.92
SOX3P41225 VN1R108P-201ENST00000431580 830 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 RPL22P17-201ENST00000438729 315 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL049734.2-201ENST00000441066 616 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AL121871.1-201ENST00000443413 436 ntBASIC3.05□□□□□ -1.92
SOX3P41225 MTCO1P19-201ENST00000443487 500 ntBASIC3.05□□□□□ -1.92
SOX3P41225 RAC1P7-201ENST00000445367 377 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC234775.1-201ENST00000454247 670 ntBASIC3.05□□□□□ -1.92
SOX3P41225 RNU6-956P-201ENST00000458868 103 ntBASIC3.05□□□□□ -1.92
SOX3P41225 RN7SL807P-201ENST00000470923 297 ntBASIC3.05□□□□□ -1.92
SOX3P41225 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 KCTD9P5-201ENST00000504141 1170 ntBASIC3.05□□□□□ -1.92
SOX3P41225 MTND4P2-201ENST00000507767 1203 ntBASIC3.05□□□□□ -1.92
SOX3P41225 AC004062.1-201ENST00000509926 645 ntBASIC3.05□□□□□ -1.92
SOX3P41225 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX3P41225 AC022483.1-201ENST00000514020 567 ntBASIC3.05□□□□□ -1.92
SOX3P41225 RNU1-143P-201ENST00000516296 146 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms