Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 OR1L6-202ENST00000373684 1044 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 MIR10A-201ENST00000385043 110 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC5.97□□□□□ -1.45
COL9A1P20849 SDC4P-201ENST00000453285 601 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 RPL23AP3-201ENST00000453844 468 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.97□□□□□ -1.45
COL9A1P20849 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.97□□□□□ -1.45
COL9A1P20849 RNU6-659P-201ENST00000516454 104 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 HMGB1P14-201ENST00000557424 591 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 AC127455.1-201ENST00000565496 145 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 MIR4431-201ENST00000579990 94 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 AL590392.1-201ENST00000604960 446 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 AC010632.3-201ENST00000611377 369 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 AC005296.1-201ENST00000616145 209 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 TCL6_3.1-201ENST00000619064 137 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 THAP12P9-201ENST00000503971 2360 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL9A1P20849 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC5.97□□□□□ -1.45
COL9A1P20849 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL9A1P20849 AP000756.2-201ENST00000624168 2567 ntBASIC5.97□□□□□ -1.45
COL9A1P20849 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL9A1P20849 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.97□□□□□ -1.45
COL9A1P20849 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL9A1P20849 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL9A1P20849 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL9A1P20849 AC009541.1-201ENST00000438279 2662 ntBASIC5.96□□□□□ -1.45
COL9A1P20849 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC5.96□□□□□ -1.45
COL9A1P20849 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL9A1P20849 AC008568.2-201ENST00000623862 2313 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 RNU6-1167P-201ENST00000363227 94 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 RNU6-336P-201ENST00000364891 107 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 SNORA36C-201ENST00000384289 132 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 ELOCP19-201ENST00000411919 318 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 RAB9AP3-201ENST00000412737 573 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.96□□□□□ -1.46
COL9A1P20849 AC004975.1-201ENST00000428733 208 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.96□□□□□ -1.46
COL9A1P20849 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.96□□□□□ -1.46
COL9A1P20849 RAB9AP1-201ENST00000449393 573 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC5.96□□□□□ -1.46
COL9A1P20849 Y_RNA.797-201ENST00000515977 94 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 RNU6-191P-201ENST00000516295 94 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 AC115990.1-201ENST00000526957 301 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC5.96□□□□□ -1.46
COL9A1P20849 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 TXNP4-201ENST00000575018 310 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.96□□□□□ -1.46
COL9A1P20849 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.96□□□□□ -1.46
COL9A1P20849 U1.25-201ENST00000614085 162 ntBASIC5.96□□□□□ -1.46
COL9A1P20849 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL9A1P20849 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL9A1P20849 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL9A1P20849 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.96□□□□□ -1.46
COL9A1P20849 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.96□□□□□ -1.46
COL9A1P20849 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC5.96□□□□□ -1.46
COL9A1P20849 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 AL117339.4-201ENST00000608335 7063 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.95□□□□□ -1.46
COL9A1P20849 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 RNU6-961P-201ENST00000363893 105 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RNU5E-7P-201ENST00000365290 117 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 AC008171.1-201ENST00000395058 200 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.95□□□□□ -1.46
COL9A1P20849 RNU6-603P-201ENST00000411403 107 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RPL18P10-201ENST00000425606 538 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RPS27AP12-201ENST00000429552 465 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 COX6B1P7-201ENST00000430845 235 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 AL353748.1-201ENST00000440753 474 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 AL389915.2-201ENST00000454576 441 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 AURKAPS2-201ENST00000454983 333 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RN7SL591P-201ENST00000496150 292 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 AC107027.2-201ENST00000512197 115 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.95□□□□□ -1.46
COL9A1P20849 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.95□□□□□ -1.46
COL9A1P20849 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.95□□□□□ -1.46
COL9A1P20849 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.95□□□□□ -1.46
COL9A1P20849 MIR3124-201ENST00000582636 67 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 AC022441.3-201ENST00000605737 136 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms