Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC008065.1-201ENST00000428525 348 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG1P18858 AC127537.2-201ENST00000439258 465 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG1P18858 AC008897.1-201ENST00000494006 347 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AC002456.2-201ENST00000509356 380 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG1P18858 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG1P18858 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG1P18858 AC091042.1-201ENST00000579213 173 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.3□□□□□ -1.56
LIG1P18858 AC005255.1-201ENST00000593748 216 ntBASIC5.3□□□□□ -1.56
LIG1P18858 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 AC092747.3-201ENST00000603769 301 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 AC012409.4-201ENST00000612923 249 ntBASIC5.3□□□□□ -1.56
LIG1P18858 U4.1-201ENST00000620349 87 ntBASIC5.3□□□□□ -1.56
LIG1P18858 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.3□□□□□ -1.56
LIG1P18858 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 AC092435.4-201ENST00000623012 4159 ntBASIC5.29□□□□□ -1.56
LIG1P18858 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.29□□□□□ -1.56
LIG1P18858 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 AL590240.1-201ENST00000334118 313 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RNU6-1115P-201ENST00000362490 106 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RNU6-960P-201ENST00000364056 120 ntBASIC5.29□□□□□ -1.56
LIG1P18858 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 RNU6-505P-201ENST00000384427 107 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RNU6-601P-201ENST00000384540 107 ntBASIC5.29□□□□□ -1.56
LIG1P18858 CYB5AP4-201ENST00000396692 399 ntBASIC5.29□□□□□ -1.56
LIG1P18858 HDGFP1-201ENST00000405943 252 ntBASIC5.29□□□□□ -1.56
LIG1P18858 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 RNU4-46P-201ENST00000410818 138 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.29□□□□□ -1.56
LIG1P18858 AC114491.1-201ENST00000416095 246 ntBASIC5.29□□□□□ -1.56
LIG1P18858 MCFD2P1-201ENST00000417812 300 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RPL7P46-201ENST00000425129 740 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RPL21P91-201ENST00000429231 479 ntBASIC5.29□□□□□ -1.56
LIG1P18858 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 VWA8P1-201ENST00000510889 176 ntBASIC5.29□□□□□ -1.56
LIG1P18858 RNU6-798P-201ENST00000516912 103 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AC135001.1-201ENST00000544546 283 ntBASIC5.29□□□□□ -1.56
LIG1P18858 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.29□□□□□ -1.56
LIG1P18858 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.29□□□□□ -1.56
LIG1P18858 AC105129.1-201ENST00000560250 297 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AC008269.2-201ENST00000561915 1105 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 AC138761.3-201ENST00000579993 334 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 AL161616.1-201ENST00000611867 286 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AC103705.1-201ENST00000619013 241 ntBASIC5.29□□□□□ -1.56
LIG1P18858 MIR6853-201ENST00000619642 74 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AL136313.1-201ENST00000624804 202 ntBASIC5.29□□□□□ -1.56
LIG1P18858 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.29□□□□□ -1.56
LIG1P18858 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.29□□□□□ -1.56
LIG1P18858 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIG1P18858 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LIG1P18858 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIG1P18858 MAPK10-303ENST00000641324 3959 ntBASIC5.28□□□□□ -1.56
LIG1P18858 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG1P18858 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-1287P-201ENST00000362914 107 ntBASIC5.28□□□□□ -1.56
LIG1P18858 Y_RNA.149-201ENST00000363558 117 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-593P-201ENST00000364716 112 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-1040P-201ENST00000383974 107 ntBASIC5.28□□□□□ -1.56
LIG1P18858 SNORA24.1-201ENST00000384401 135 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-310P-201ENST00000384655 107 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-1060P-201ENST00000384664 107 ntBASIC5.28□□□□□ -1.56
LIG1P18858 Y_RNA.576-201ENST00000384781 102 ntBASIC5.28□□□□□ -1.56
LIG1P18858 MIR1302-3-201ENST00000408128 138 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNA5SP146-201ENST00000410743 123 ntBASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-387P-201ENST00000411331 105 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AC114755.2-201ENST00000413520 361 ntBASIC5.28□□□□□ -1.56
LIG1P18858 NRBF2P3-201ENST00000432731 865 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG1P18858 RPL21P23-201ENST00000446654 460 ntBASIC5.28□□□□□ -1.56
LIG1P18858 SNORD97-201ENST00000459187 142 ntBASIC5.28□□□□□ -1.56
LIG1P18858 SNORD108-201ENST00000459332 71 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG1P18858 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG1P18858 RNU6-764P-201ENST00000516396 105 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms