Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD4P09016 MIR548AB-201ENST00000584917 84 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC078899.3-201ENST00000599065 212 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 BBIP1P1-201ENST00000602999 279 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AP000403.1-201ENST00000603349 851 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 RPL23AP92-201ENST00000603609 255 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC090186.1-201ENST00000605991 572 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC080013.4-201ENST00000607624 649 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC103591.3-201ENST00000608684 209 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC098679.4-201ENST00000624241 654 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD4P09016 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD4P09016 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 RNA5SP258-201ENST00000362750 119 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RNA5SP374-201ENST00000362939 125 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RNU5F-7P-201ENST00000363696 115 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RNA5SP235-201ENST00000365411 114 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RNY3P10-201ENST00000384764 102 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RPL21P3-201ENST00000395517 478 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AL031121.1-201ENST00000406553 254 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RPL5P18-201ENST00000406671 891 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 RAD23BP2-201ENST00000416003 1207 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 RPS27AP14-201ENST00000422868 454 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC093151.1-201ENST00000427711 313 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 PSMA6P3-201ENST00000428242 164 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RSU1P2-202ENST00000437884 485 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 USP9YP29-201ENST00000445112 563 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 HMGN2P16-201ENST00000456802 261 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 HMGN1P18-201ENST00000457642 277 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC146507.2-201ENST00000460608 476 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AP001992.1-205ENST00000462248 379 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 S100A11P2-201ENST00000467589 312 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC010285.1-201ENST00000470580 392 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC084357.1-201ENST00000473404 255 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 RPS3AP14-201ENST00000483907 780 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 CBX3P3-201ENST00000508108 532 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC024589.1-201ENST00000512207 263 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 MTND3P5-201ENST00000512798 333 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 SNORA31.20-201ENST00000517111 133 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC068587.4-201ENST00000533893 186 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AP000873.5-201ENST00000533906 236 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXD4P09016 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 AC091489.2-201ENST00000566263 604 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 MIR544B-201ENST00000582372 78 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC068276.1-201ENST00000605793 379 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 AL445264.1-201ENST00000621719 171 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXD4P09016 AC092656.1-203ENST00000624134 423 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC025048.6-202ENST00000627667 438 ntBASIC3.01□□□□□ -1.93
HOXD4P09016 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD4P09016 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD4P09016 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD4P09016 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD4P09016 MTND4P4-201ENST00000439033 1366 ntBASIC3□□□□□ -1.93
HOXD4P09016 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD4P09016 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD4P09016 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD4P09016 RNU6-1249P-201ENST00000363237 111 ntBASIC3□□□□□ -1.93
HOXD4P09016 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 Y_RNA.559-201ENST00000384686 107 ntBASIC3□□□□□ -1.93
HOXD4P09016 U8.14-201ENST00000390843 143 ntBASIC3□□□□□ -1.93
HOXD4P09016 RN7SKP266-201ENST00000410232 287 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL445669.1-201ENST00000426743 755 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3□□□□□ -1.93
HOXD4P09016 AC244505.4-201ENST00000434905 287 ntBASIC3□□□□□ -1.93
HOXD4P09016 MTND1P28-201ENST00000435623 950 ntBASIC3□□□□□ -1.93
HOXD4P09016 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 MUPP-201ENST00000438111 566 ntBASIC3□□□□□ -1.93
HOXD4P09016 HSPE1P28-201ENST00000443139 211 ntBASIC3□□□□□ -1.93
HOXD4P09016 SSXP5-201ENST00000443473 287 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms