Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL121834.1-202ENST00000404494 277 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 HSPE1P8-201ENST00000406997 288 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 RN7SKP106-201ENST00000410832 272 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 Y_RNA.646-201ENST00000410980 101 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 RPS12P24-201ENST00000412619 387 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 AC114755.2-201ENST00000413520 361 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA3O43365 BX842559.1-201ENST00000419615 532 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 RPL21P109-201ENST00000422213 475 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AL591212.2-201ENST00000433923 257 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 AL450023.3-201ENST00000440592 271 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 RPL26P6-201ENST00000440913 438 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 TXNP1-201ENST00000441872 371 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 CYCSP24-201ENST00000445119 316 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA3O43365 AL691482.1-201ENST00000453255 87 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 snoU13.1-201ENST00000459157 104 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC087884.1-201ENST00000469738 328 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 RPL12P20-201ENST00000475538 479 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA3O43365 RN7SKP92-201ENST00000517266 244 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXA3O43365 RNU6-323P-201ENST00000521915 107 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA3O43365 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXA3O43365 CYCSP27-201ENST00000527643 293 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC063950.1-201ENST00000552036 308 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 DNAJC8P1-201ENST00000554535 372 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA3O43365 AC005951.2-201ENST00000576282 495 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA3O43365 RN7SL435P-201ENST00000584418 282 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 AC012119.1-201ENST00000603184 222 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA3O43365 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
HOXA3O43365 RMST_9.1-201ENST00000619945 193 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 AL669831.3-213ENST00000636676 183 ntBASIC3.91□□□□□ -1.78
HOXA3O43365 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA3O43365 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA3O43365 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA3O43365 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA3O43365 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA3O43365 MTND5P16-201ENST00000460269 1703 ntBASIC3.9□□□□□ -1.78
HOXA3O43365 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA3O43365 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA3O43365 FAP-203ENST00000443424 2598 ntTSL 2 BASIC3.9□□□□□ -1.78
HOXA3O43365 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
HOXA3O43365 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXA3O43365 SNORA73.1-201ENST00000363107 205 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 RNU6-371P-201ENST00000364283 108 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 RNU6-593P-201ENST00000364716 112 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 SNORA62-201ENST00000365493 153 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA3O43365 RNU6-45P-201ENST00000384471 107 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 MIR1271-201ENST00000408537 86 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 RPS12P23-201ENST00000419579 400 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 MTATP6P4-201ENST00000427725 675 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 PRDX3P3-201ENST00000447765 522 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 TPT1P12-201ENST00000448968 492 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AC009901.1-201ENST00000506703 541 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA3O43365 RN7SKP46-201ENST00000515942 234 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA3O43365 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC133555.2-201ENST00000550213 292 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 BDH2P1-201ENST00000602288 736 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AP000654.2-201ENST00000605633 586 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 HMGN2P28-201ENST00000606102 262 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 MIR15A-201ENST00000607334 83 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 AC006065.5-201ENST00000623427 349 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA3O43365 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 AC139713.2-215ENST00000641428 5037 ntBASIC3.9□□□□□ -1.79
HOXA3O43365 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HOXA3O43365 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA3O43365 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA3O43365 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA3O43365 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HOXA3O43365 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 AC009812.4-201ENST00000569134 1805 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms