Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC092573.2-201ENST00000434546 243 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 TAF9P1-201ENST00000445421 515 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC11O43248 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC11O43248 AL033528.1-201ENST00000453780 140 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 TAF9P2-201ENST00000454958 515 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC074250.1-201ENST00000511117 192 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC107934.1-201ENST00000522215 217 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC007115.1-201ENST00000546853 234 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC012414.6-201ENST00000568241 401 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 MIR3682-201ENST00000581338 84 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 MIR3118-1-201ENST00000581787 76 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC009977.1-201ENST00000586015 570 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC002545.1-201ENST00000592511 181 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC096577.2-201ENST00000611455 153 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 AC091953.2-201ENST00000623979 160 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
HOXC11O43248 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
HOXC11O43248 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
HOXC11O43248 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
HOXC11O43248 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC11O43248 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC11O43248 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.71□□□□□ -1.82
HOXC11O43248 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC11O43248 TPTE2P4-201ENST00000258589 1605 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 RNU6-1284P-201ENST00000363701 100 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
HOXC11O43248 HMGB3P20-201ENST00000417997 600 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC019097.1-201ENST00000424783 735 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC137499.1-201ENST00000427602 88 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 RPL23AP83-201ENST00000434984 473 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC11O43248 HMGB3P8-201ENST00000449709 577 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC11O43248 CYCSP35-201ENST00000451978 304 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC11O43248 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC084357.1-201ENST00000473404 255 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 RPL30P14-201ENST00000482744 348 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 RPL30P5-201ENST00000494923 336 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 Y_RNA.672-201ENST00000516289 104 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC011979.2-201ENST00000527568 352 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC007458.1-201ENST00000542812 373 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC11O43248 AC005771.1-201ENST00000585581 349 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC073544.2-201ENST00000601155 540 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC135507.1-201ENST00000607214 561 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC090132.2-201ENST00000615881 347 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC006338.1-201ENST00000618453 749 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC006111.3-201ENST00000622137 383 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 AC110801.1-201ENST00000623590 212 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 FRG1KP-201ENST00000623592 341 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC11O43248 FAM35BP-202ENST00000497389 3337 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 MFSD8-236ENST00000641509 4050 ntBASIC3.71□□□□□ -1.82
HOXC11O43248 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC11O43248 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXC11O43248 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC11O43248 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXC11O43248 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 OR1S2-201ENST00000302592 978 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC11O43248 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 MIR23A-201ENST00000385245 73 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 HMGN2P8-201ENST00000391458 268 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AL513331.1-201ENST00000411908 397 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC11O43248 TAAR7P-201ENST00000436141 242 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 ST13P20-201ENST00000447996 1065 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 RNU6-956P-201ENST00000458868 103 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 MTND1P3-201ENST00000484956 952 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXC11O43248 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC11O43248 RN7SKP209-201ENST00000516888 304 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 RNA5SP291-201ENST00000517222 105 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AP003181.2-201ENST00000528941 181 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms