Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 AP001160.2-201ENST00000596071 487 ntBASIC20.69■□□□□ 0.9
LRCH3Q96II8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LRCH3Q96II8 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRCH3Q96II8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 RPS8P6-201ENST00000426177 609 ntBASIC20.68■□□□□ 0.9
LRCH3Q96II8 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 AF238378.1-201ENST00000526806 358 ntBASIC20.68■□□□□ 0.9
LRCH3Q96II8 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.68■□□□□ 0.9
LRCH3Q96II8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRCH3Q96II8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.67■□□□□ 0.9
LRCH3Q96II8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 SAPCD2P3-201ENST00000455031 850 ntBASIC20.67■□□□□ 0.9
LRCH3Q96II8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 AL390719.2-201ENST00000606993 987 ntBASIC20.67■□□□□ 0.9
LRCH3Q96II8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRCH3Q96II8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LRCH3Q96II8 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AL031284.1-201ENST00000419297 478 ntBASIC20.66■□□□□ 0.9
LRCH3Q96II8 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AC098831.1-202ENST00000438821 336 ntBASIC20.66■□□□□ 0.9
LRCH3Q96II8 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AC074051.2-201ENST00000565115 352 ntBASIC20.66■□□□□ 0.9
LRCH3Q96II8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 AC243591.1-201ENST00000452967 1364 ntBASIC20.66■□□□□ 0.9
LRCH3Q96II8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRCH3Q96II8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 Z98882.1-201ENST00000622160 2253 ntBASIC20.66■□□□□ 0.9
LRCH3Q96II8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LRCH3Q96II8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRCH3Q96II8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRCH3Q96II8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 PKD1P6-201ENST00000343738 4769 ntBASIC20.65■□□□□ 0.9
LRCH3Q96II8 LINC00167-201ENST00000530583 1419 ntBASIC20.65■□□□□ 0.9
LRCH3Q96II8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.65■□□□□ 0.9
LRCH3Q96II8 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 AC099336.1-202ENST00000602961 463 ntBASIC20.65■□□□□ 0.9
LRCH3Q96II8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.65■□□□□ 0.9
LRCH3Q96II8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms