Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 VENTXP5-201ENST00000523979 775 ntBASIC16.44■□□□□ 0.22
ABCA4P78363 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
ABCA4P78363 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.44■□□□□ 0.22
ABCA4P78363 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.44■□□□□ 0.22
ABCA4P78363 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.43■□□□□ 0.22
ABCA4P78363 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.43■□□□□ 0.22
ABCA4P78363 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA4P78363 SPDYE15P-201ENST00000424157 909 ntBASIC16.43■□□□□ 0.22
ABCA4P78363 TSPY21P-201ENST00000433481 731 ntBASIC16.43■□□□□ 0.22
ABCA4P78363 TSPY23P-201ENST00000440136 739 ntBASIC16.43■□□□□ 0.22
ABCA4P78363 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 LINC01006-201ENST00000333319 2292 ntBASIC16.43■□□□□ 0.22
ABCA4P78363 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA4P78363 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA4P78363 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
ABCA4P78363 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ABCA4P78363 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.43■□□□□ 0.22
ABCA4P78363 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA4P78363 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.43■□□□□ 0.22
ABCA4P78363 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.43■□□□□ 0.22
ABCA4P78363 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 AC006538.3-201ENST00000612495 578 ntBASIC16.43■□□□□ 0.22
ABCA4P78363 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA4P78363 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.42■□□□□ 0.22
ABCA4P78363 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.42■□□□□ 0.22
ABCA4P78363 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 AC009237.14-201ENST00000609975 1594 ntBASIC16.42■□□□□ 0.22
ABCA4P78363 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
ABCA4P78363 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.42■□□□□ 0.22
ABCA4P78363 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
ABCA4P78363 HLA-F-220ENST00000434407 884 ntBASIC16.42■□□□□ 0.22
ABCA4P78363 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.42■□□□□ 0.22
ABCA4P78363 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA4P78363 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.42■□□□□ 0.22
ABCA4P78363 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA4P78363 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ABCA4P78363 AC012313.10-201ENST00000623509 926 ntBASIC16.41■□□□□ 0.22
ABCA4P78363 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.41■□□□□ 0.22
ABCA4P78363 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA4P78363 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA4P78363 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA4P78363 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA4P78363 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA4P78363 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms