Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20■□□□□ 0.79
COL6A3P12111 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20■□□□□ 0.79
COL6A3P12111 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL6A3P12111 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A3P12111 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A3P12111 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.99■□□□□ 0.79
COL6A3P12111 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 AC245100.3-201ENST00000441281 285 ntBASIC19.99■□□□□ 0.79
COL6A3P12111 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.99■□□□□ 0.79
COL6A3P12111 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A3P12111 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.99■□□□□ 0.79
COL6A3P12111 AC040169.1-201ENST00000565382 521 ntBASIC19.99■□□□□ 0.79
COL6A3P12111 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A3P12111 AC005034.1-201ENST00000426657 489 ntBASIC19.99■□□□□ 0.79
COL6A3P12111 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 DUX4L17-201ENST00000557360 1267 ntBASIC19.99■□□□□ 0.79
COL6A3P12111 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A3P12111 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A3P12111 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 CNN2P11-201ENST00000429351 262 ntBASIC19.98■□□□□ 0.79
COL6A3P12111 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.98■□□□□ 0.79
COL6A3P12111 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.98■□□□□ 0.79
COL6A3P12111 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A3P12111 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A3P12111 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL6A3P12111 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A3P12111 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.98■□□□□ 0.79
COL6A3P12111 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A3P12111 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.97■□□□□ 0.79
COL6A3P12111 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.97■□□□□ 0.79
COL6A3P12111 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A3P12111 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL6A3P12111 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
COL6A3P12111 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A3P12111 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.97■□□□□ 0.79
COL6A3P12111 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL6A3P12111 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL6A3P12111 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL6A3P12111 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 GK-202ENST00000378941 458 ntTSL 3 BASIC19.97■□□□□ 0.79
COL6A3P12111 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A3P12111 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 PAWRP1-201ENST00000451083 565 ntBASIC19.97■□□□□ 0.79
COL6A3P12111 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A3P12111 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
COL6A3P12111 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.96■□□□□ 0.79
COL6A3P12111 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 TMEM179-206ENST00000616017 1645 ntBASIC19.96■□□□□ 0.79
COL6A3P12111 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A3P12111 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A3P12111 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A3P12111 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A3P12111 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.95■□□□□ 0.78
COL6A3P12111 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 AC012640.2-201ENST00000561606 901 ntBASIC19.95■□□□□ 0.78
COL6A3P12111 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.95■□□□□ 0.78
COL6A3P12111 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.95■□□□□ 0.78
COL6A3P12111 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A3P12111 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms