Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
RAPGEF3O95398 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC28.71■■■□□ 2.19
RAPGEF3O95398 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.71■■■□□ 2.19
RAPGEF3O95398 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
RAPGEF3O95398 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC28.7■■■□□ 2.19
RAPGEF3O95398 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.19
RAPGEF3O95398 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC28.7■■■□□ 2.19
RAPGEF3O95398 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.19
RAPGEF3O95398 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC28.7■■■□□ 2.18
RAPGEF3O95398 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 AC090616.6-201ENST00000582640 721 ntBASIC28.7■■■□□ 2.18
RAPGEF3O95398 AC005332.3-201ENST00000589904 676 ntBASIC28.7■■■□□ 2.18
RAPGEF3O95398 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC28.7■■■□□ 2.18
RAPGEF3O95398 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC28.7■■■□□ 2.18
RAPGEF3O95398 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC28.7■■■□□ 2.18
RAPGEF3O95398 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RAPGEF3O95398 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 AC106730.1-201ENST00000566722 1090 ntBASIC28.69■■■□□ 2.18
RAPGEF3O95398 AC148477.8-201ENST00000624298 468 ntBASIC28.69■■■□□ 2.18
RAPGEF3O95398 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
RAPGEF3O95398 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RAPGEF3O95398 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC28.68■■■□□ 2.18
RAPGEF3O95398 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RAPGEF3O95398 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RAPGEF3O95398 FABP5-202ENST00000396359 986 ntTSL 5 BASIC28.68■■■□□ 2.18
RAPGEF3O95398 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC28.68■■■□□ 2.18
RAPGEF3O95398 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
RAPGEF3O95398 MIR3180-5-201ENST00000583743 153 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 AC064862.7-201ENST00000604520 867 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 AL390719.2-201ENST00000606993 987 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 IGHV3-41-201ENST00000613121 348 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 AC112497.1-201ENST00000624824 639 ntBASIC28.68■■■□□ 2.18
RAPGEF3O95398 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
RAPGEF3O95398 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
RAPGEF3O95398 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC28.68■■■□□ 2.18
RAPGEF3O95398 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
RAPGEF3O95398 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
RAPGEF3O95398 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RAPGEF3O95398 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC28.67■■■□□ 2.18
RAPGEF3O95398 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RAPGEF3O95398 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RAPGEF3O95398 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 AC243591.1-201ENST00000452967 1364 ntBASIC28.66■■■□□ 2.18
RAPGEF3O95398 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RAPGEF3O95398 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RAPGEF3O95398 AL031284.1-201ENST00000419297 478 ntBASIC28.66■■■□□ 2.18
RAPGEF3O95398 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC28.66■■■□□ 2.18
RAPGEF3O95398 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
RAPGEF3O95398 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RAPGEF3O95398 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RAPGEF3O95398 BX842568.4-201ENST00000421222 227 ntBASIC28.65■■■□□ 2.18
RAPGEF3O95398 COX10-202ENST00000429152 875 ntTSL 2 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 FAM197Y8-203ENST00000450145 560 ntBASIC28.65■■■□□ 2.18
RAPGEF3O95398 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 Z69720.1-201ENST00000601483 472 ntBASIC28.65■■■□□ 2.18
RAPGEF3O95398 IGHV3OR16-7-201ENST00000604106 360 ntBASIC28.65■■■□□ 2.18
RAPGEF3O95398 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
RAPGEF3O95398 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
RAPGEF3O95398 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RAPGEF3O95398 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RAPGEF3O95398 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RAPGEF3O95398 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
RAPGEF3O95398 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC28.64■■■□□ 2.18
RAPGEF3O95398 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC28.64■■■□□ 2.18
RAPGEF3O95398 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC28.64■■■□□ 2.18
RAPGEF3O95398 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms