Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps39Q8R5L3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Vps39Q8R5L3 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps39Q8R5L3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Vps39Q8R5L3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Vps39Q8R5L3 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
Vps39Q8R5L3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Vps39Q8R5L3 Nkain2-201ENSMUST00000092602 558 ntBASIC23.19■■□□□ 1.3
Vps39Q8R5L3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
Vps39Q8R5L3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Vps39Q8R5L3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Vps39Q8R5L3 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.17■■□□□ 1.3
Vps39Q8R5L3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Vps39Q8R5L3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.15■■□□□ 1.3
Vps39Q8R5L3 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.15■■□□□ 1.3
Vps39Q8R5L3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Vps39Q8R5L3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
Vps39Q8R5L3 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Vps39Q8R5L3 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Vps39Q8R5L3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Vps39Q8R5L3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Vps39Q8R5L3 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Vps39Q8R5L3 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Vps39Q8R5L3 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.11■■□□□ 1.29
Vps39Q8R5L3 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Vps39Q8R5L3 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Vps39Q8R5L3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Vps39Q8R5L3 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
Vps39Q8R5L3 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
Vps39Q8R5L3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC23.09■■□□□ 1.29
Vps39Q8R5L3 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Vps39Q8R5L3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Vps39Q8R5L3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.08■■□□□ 1.29
Vps39Q8R5L3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Vps39Q8R5L3 Gm42809-201ENSMUST00000198429 1138 ntBASIC23.07■■□□□ 1.28
Vps39Q8R5L3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23.07■■□□□ 1.28
Vps39Q8R5L3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Vps39Q8R5L3 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Vps39Q8R5L3 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Vps39Q8R5L3 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Vps39Q8R5L3 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Vps39Q8R5L3 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.04■■□□□ 1.28
Vps39Q8R5L3 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Vps39Q8R5L3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Vps39Q8R5L3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Vps39Q8R5L3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Vps39Q8R5L3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
Vps39Q8R5L3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
Vps39Q8R5L3 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps39Q8R5L3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps39Q8R5L3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Vps39Q8R5L3 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Vps39Q8R5L3 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Vps39Q8R5L3 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Vps39Q8R5L3 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.98■■□□□ 1.27
Vps39Q8R5L3 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Vps39Q8R5L3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Vps39Q8R5L3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Vps39Q8R5L3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Vps39Q8R5L3 Gm14121-201ENSMUST00000121441 1380 ntBASIC22.97■■□□□ 1.27
Vps39Q8R5L3 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Vps39Q8R5L3 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Gm9939-201ENSMUST00000067161 1154 ntBASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Vps39Q8R5L3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Vps39Q8R5L3 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Vps39Q8R5L3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC22.95■■□□□ 1.26
Vps39Q8R5L3 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Vps39Q8R5L3 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Vps39Q8R5L3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22.94■■□□□ 1.26
Vps39Q8R5L3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Vps39Q8R5L3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC22.94■■□□□ 1.26
Vps39Q8R5L3 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Vps39Q8R5L3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms