Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
Ccdc40Q8BI79 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ccdc40Q8BI79 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Ccdc40Q8BI79 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ccdc40Q8BI79 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ccdc40Q8BI79 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Ccdc40Q8BI79 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ccdc40Q8BI79 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ccdc40Q8BI79 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
Ccdc40Q8BI79 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ccdc40Q8BI79 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.96■■□□□ 1.43
Ccdc40Q8BI79 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ccdc40Q8BI79 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.95■■□□□ 1.42
Ccdc40Q8BI79 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ccdc40Q8BI79 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ccdc40Q8BI79 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ccdc40Q8BI79 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Ccdc40Q8BI79 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ccdc40Q8BI79 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ccdc40Q8BI79 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.91■■□□□ 1.42
Ccdc40Q8BI79 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ccdc40Q8BI79 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ccdc40Q8BI79 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.9■■□□□ 1.42
Ccdc40Q8BI79 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
Ccdc40Q8BI79 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ccdc40Q8BI79 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ccdc40Q8BI79 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.89■■□□□ 1.42
Ccdc40Q8BI79 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Ccdc40Q8BI79 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ccdc40Q8BI79 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ccdc40Q8BI79 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.89■■□□□ 1.41
Ccdc40Q8BI79 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ccdc40Q8BI79 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ccdc40Q8BI79 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC23.88■■□□□ 1.41
Ccdc40Q8BI79 Gm6821-201ENSMUST00000107540 542 ntBASIC23.88■■□□□ 1.41
Ccdc40Q8BI79 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ccdc40Q8BI79 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Ccdc40Q8BI79 Particl-201ENSMUST00000205370 1560 ntBASIC23.86■■□□□ 1.41
Ccdc40Q8BI79 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Ccdc40Q8BI79 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.86■■□□□ 1.41
Ccdc40Q8BI79 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc40Q8BI79 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc40Q8BI79 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ccdc40Q8BI79 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc40Q8BI79 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc40Q8BI79 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ccdc40Q8BI79 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc40Q8BI79 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC23.83■■□□□ 1.41
Ccdc40Q8BI79 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ccdc40Q8BI79 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc40Q8BI79 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC23.82■■□□□ 1.4
Ccdc40Q8BI79 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc40Q8BI79 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc40Q8BI79 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc40Q8BI79 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.81■■□□□ 1.4
Ccdc40Q8BI79 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Ccdc40Q8BI79 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc40Q8BI79 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc40Q8BI79 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC23.79■■□□□ 1.4
Ccdc40Q8BI79 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Ccdc40Q8BI79 Gm8503-201ENSMUST00000118131 455 ntBASIC23.79■■□□□ 1.4
Ccdc40Q8BI79 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
Ccdc40Q8BI79 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc40Q8BI79 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc40Q8BI79 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Ccdc40Q8BI79 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.76■■□□□ 1.39
Ccdc40Q8BI79 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ccdc40Q8BI79 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Ccdc40Q8BI79 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ccdc40Q8BI79 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ccdc40Q8BI79 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.75■■□□□ 1.39
Ccdc40Q8BI79 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Ccdc40Q8BI79 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ccdc40Q8BI79 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Ccdc40Q8BI79 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ccdc40Q8BI79 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Ccdc40Q8BI79 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ccdc40Q8BI79 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ccdc40Q8BI79 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ccdc40Q8BI79 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC23.72■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms