Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
Smarca1Q6PGB8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Smarca1Q6PGB8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Smarca1Q6PGB8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Smarca1Q6PGB8 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC25.99■■□□□ 1.75
Smarca1Q6PGB8 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.75
Smarca1Q6PGB8 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Smarca1Q6PGB8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Smarca1Q6PGB8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Smarca1Q6PGB8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC25.94■■□□□ 1.74
Smarca1Q6PGB8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Smarca1Q6PGB8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Smarca1Q6PGB8 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
Smarca1Q6PGB8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Smarca1Q6PGB8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Particl-201ENSMUST00000205370 1560 ntBASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Smarca1Q6PGB8 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Smarca1Q6PGB8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Smarca1Q6PGB8 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.72
Smarca1Q6PGB8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Smarca1Q6PGB8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Smarca1Q6PGB8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Smarca1Q6PGB8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarca1Q6PGB8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarca1Q6PGB8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.73■■□□□ 1.71
Smarca1Q6PGB8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Smarca1Q6PGB8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.71■■□□□ 1.71
Smarca1Q6PGB8 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Smarca1Q6PGB8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Smarca1Q6PGB8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Smarca1Q6PGB8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Gm37847-201ENSMUST00000192163 1497 ntBASIC25.67■■□□□ 1.7
Smarca1Q6PGB8 Gm31748-201ENSMUST00000194938 1497 ntBASIC25.67■■□□□ 1.7
Smarca1Q6PGB8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms