Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
Smarca1Q6PGB8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Smarca1Q6PGB8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Smarca1Q6PGB8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Smarca1Q6PGB8 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC25.99■■□□□ 1.75
Smarca1Q6PGB8 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.75
Smarca1Q6PGB8 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Smarca1Q6PGB8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Smarca1Q6PGB8 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Smarca1Q6PGB8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Smarca1Q6PGB8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC25.94■■□□□ 1.74
Smarca1Q6PGB8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Smarca1Q6PGB8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
Smarca1Q6PGB8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Smarca1Q6PGB8 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
Smarca1Q6PGB8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Smarca1Q6PGB8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Particl-201ENSMUST00000205370 1560 ntBASIC25.9■■□□□ 1.74
Smarca1Q6PGB8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Smarca1Q6PGB8 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Smarca1Q6PGB8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Smarca1Q6PGB8 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Smarca1Q6PGB8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarca1Q6PGB8 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Smarca1Q6PGB8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarca1Q6PGB8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.83■■□□□ 1.73
Smarca1Q6PGB8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.72
Smarca1Q6PGB8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Smarca1Q6PGB8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Smarca1Q6PGB8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Smarca1Q6PGB8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC25.78■■□□□ 1.72
Smarca1Q6PGB8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarca1Q6PGB8 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC25.76■■□□□ 1.71
Smarca1Q6PGB8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Smarca1Q6PGB8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Smarca1Q6PGB8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarca1Q6PGB8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarca1Q6PGB8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.73■■□□□ 1.71
Smarca1Q6PGB8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Smarca1Q6PGB8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Smarca1Q6PGB8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.71■■□□□ 1.71
Smarca1Q6PGB8 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Smarca1Q6PGB8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Smarca1Q6PGB8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Smarca1Q6PGB8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Smarca1Q6PGB8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Smarca1Q6PGB8 Gm37847-201ENSMUST00000192163 1497 ntBASIC25.67■■□□□ 1.7
Smarca1Q6PGB8 Gm31748-201ENSMUST00000194938 1497 ntBASIC25.67■■□□□ 1.7
Smarca1Q6PGB8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms