Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.96■□□□□ 0.95
Cdh11P55288 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cdh11P55288 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cdh11P55288 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Cdh11P55288 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.95■□□□□ 0.95
Cdh11P55288 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.95■□□□□ 0.94
Cdh11P55288 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cdh11P55288 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cdh11P55288 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cdh11P55288 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.95■□□□□ 0.94
Cdh11P55288 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cdh11P55288 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cdh11P55288 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdh11P55288 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cdh11P55288 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Cdh11P55288 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.93■□□□□ 0.94
Cdh11P55288 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Cdh11P55288 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdh11P55288 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdh11P55288 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdh11P55288 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.91■□□□□ 0.94
Cdh11P55288 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdh11P55288 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Cdh11P55288 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdh11P55288 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdh11P55288 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdh11P55288 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.9■□□□□ 0.94
Cdh11P55288 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Cdh11P55288 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdh11P55288 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Cdh11P55288 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cdh11P55288 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cdh11P55288 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cdh11P55288 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Cdh11P55288 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.88■□□□□ 0.93
Cdh11P55288 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cdh11P55288 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdh11P55288 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Cdh11P55288 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cdh11P55288 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cdh11P55288 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Cdh11P55288 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
Cdh11P55288 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdh11P55288 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdh11P55288 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdh11P55288 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cdh11P55288 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cdh11P55288 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdh11P55288 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Cdh11P55288 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdh11P55288 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.84■□□□□ 0.93
Cdh11P55288 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdh11P55288 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cdh11P55288 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Cdh11P55288 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdh11P55288 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdh11P55288 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdh11P55288 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Cdh11P55288 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Cdh11P55288 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cdh11P55288 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cdh11P55288 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdh11P55288 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.79■□□□□ 0.92
Cdh11P55288 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.79■□□□□ 0.92
Cdh11P55288 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Cdh11P55288 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdh11P55288 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.78■□□□□ 0.92
Cdh11P55288 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cdh11P55288 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdh11P55288 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.77■□□□□ 0.92
Cdh11P55288 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
Cdh11P55288 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdh11P55288 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cdh11P55288 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cdh11P55288 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdh11P55288 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cdh11P55288 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdh11P55288 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cdh11P55288 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdh11P55288 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Cdh11P55288 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cdh11P55288 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms