Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
Chmp6P0C0A3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Chmp6P0C0A3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
Chmp6P0C0A3 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Chmp6P0C0A3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Chmp6P0C0A3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Chmp6P0C0A3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.08■■□□□ 1.61
Chmp6P0C0A3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC25.07■■□□□ 1.6
Chmp6P0C0A3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.07■■□□□ 1.6
Chmp6P0C0A3 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chmp6P0C0A3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Chmp6P0C0A3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chmp6P0C0A3 Gm11599-201ENSMUST00000118720 878 ntBASIC25.06■■□□□ 1.6
Chmp6P0C0A3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Chmp6P0C0A3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.05■■□□□ 1.6
Chmp6P0C0A3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Chmp6P0C0A3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
Chmp6P0C0A3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Chmp6P0C0A3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Chmp6P0C0A3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Chmp6P0C0A3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Chmp6P0C0A3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Chmp6P0C0A3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Chmp6P0C0A3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
Chmp6P0C0A3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Chmp6P0C0A3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Chmp6P0C0A3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Chmp6P0C0A3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25■■□□□ 1.59
Chmp6P0C0A3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25■■□□□ 1.59
Chmp6P0C0A3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
Chmp6P0C0A3 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.99■■□□□ 1.59
Chmp6P0C0A3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
Chmp6P0C0A3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Chmp6P0C0A3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Chmp6P0C0A3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
Chmp6P0C0A3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chmp6P0C0A3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chmp6P0C0A3 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chmp6P0C0A3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chmp6P0C0A3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
Chmp6P0C0A3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Chmp6P0C0A3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Chmp6P0C0A3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Chmp6P0C0A3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC24.93■■□□□ 1.58
Chmp6P0C0A3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC24.93■■□□□ 1.58
Chmp6P0C0A3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Chmp6P0C0A3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Chmp6P0C0A3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
Chmp6P0C0A3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Chmp6P0C0A3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Chmp6P0C0A3 Gm37847-201ENSMUST00000192163 1497 ntBASIC24.91■■□□□ 1.58
Chmp6P0C0A3 Gm31748-201ENSMUST00000194938 1497 ntBASIC24.91■■□□□ 1.58
Chmp6P0C0A3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Chmp6P0C0A3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Chmp6P0C0A3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Chmp6P0C0A3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Chmp6P0C0A3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Chmp6P0C0A3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Chmp6P0C0A3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Chmp6P0C0A3 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC24.88■■□□□ 1.57
Chmp6P0C0A3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chmp6P0C0A3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Chmp6P0C0A3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Chmp6P0C0A3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC24.86■■□□□ 1.57
Chmp6P0C0A3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Chmp6P0C0A3 Gm37136-201ENSMUST00000194368 194 ntBASIC24.84■■□□□ 1.57
Chmp6P0C0A3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC24.84■■□□□ 1.57
Chmp6P0C0A3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Chmp6P0C0A3 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
Chmp6P0C0A3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC24.82■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms