Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hoxd3P09027 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Hoxd3P09027 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Hoxd3P09027 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC17.99■□□□□ 0.47
Hoxd3P09027 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC17.99■□□□□ 0.47
Hoxd3P09027 Gm11175-201ENSMUST00000116172 543 ntBASIC17.98■□□□□ 0.47
Hoxd3P09027 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Hoxd3P09027 AC154454.1-201ENSMUST00000225253 216 ntBASIC17.98■□□□□ 0.47
Hoxd3P09027 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hoxd3P09027 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hoxd3P09027 Mir6538-201ENSMUST00000183713 110 ntBASIC17.97■□□□□ 0.47
Hoxd3P09027 Mir3960-201ENSMUST00000198213 73 ntBASIC17.97■□□□□ 0.47
Hoxd3P09027 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.97■□□□□ 0.47
Hoxd3P09027 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hoxd3P09027 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hoxd3P09027 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Hoxd3P09027 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Hoxd3P09027 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hoxd3P09027 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hoxd3P09027 Gm37847-201ENSMUST00000192163 1497 ntBASIC17.95■□□□□ 0.46
Hoxd3P09027 Gm31748-201ENSMUST00000194938 1497 ntBASIC17.95■□□□□ 0.46
Hoxd3P09027 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Hoxd3P09027 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.94■□□□□ 0.46
Hoxd3P09027 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 Pkd1-207ENSMUST00000228550 1050 ntBASIC17.93■□□□□ 0.46
Hoxd3P09027 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hoxd3P09027 Gm13889-201ENSMUST00000099689 1386 ntBASIC17.92■□□□□ 0.46
Hoxd3P09027 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Hoxd3P09027 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Hoxd3P09027 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Hoxd3P09027 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Hoxd3P09027 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC17.91■□□□□ 0.46
Hoxd3P09027 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hoxd3P09027 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.91■□□□□ 0.46
Hoxd3P09027 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
Hoxd3P09027 Gm45364-201ENSMUST00000210883 159 ntBASIC17.9■□□□□ 0.46
Hoxd3P09027 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Hoxd3P09027 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hoxd3P09027 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Hoxd3P09027 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Hoxd3P09027 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Hoxd3P09027 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Hoxd3P09027 Scarna2-201ENSMUST00000157560 414 ntBASIC17.88■□□□□ 0.45
Hoxd3P09027 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC17.88■□□□□ 0.45
Hoxd3P09027 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hoxd3P09027 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hoxd3P09027 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hoxd3P09027 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.87■□□□□ 0.45
Hoxd3P09027 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.86■□□□□ 0.45
Hoxd3P09027 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Hoxd3P09027 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hoxd3P09027 Gm12818-201ENSMUST00000117562 1349 ntBASIC17.85■□□□□ 0.45
Hoxd3P09027 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Hoxd3P09027 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hoxd3P09027 Gm9806-201ENSMUST00000051080 552 ntBASIC17.85■□□□□ 0.45
Hoxd3P09027 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hoxd3P09027 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hoxd3P09027 Gm11687-201ENSMUST00000118911 886 ntBASIC17.84■□□□□ 0.45
Hoxd3P09027 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC17.84■□□□□ 0.45
Hoxd3P09027 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hoxd3P09027 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hoxd3P09027 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hoxd3P09027 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.83■□□□□ 0.45
Hoxd3P09027 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hoxd3P09027 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hoxd3P09027 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hoxd3P09027 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC17.81■□□□□ 0.44
Hoxd3P09027 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.81■□□□□ 0.44
Hoxd3P09027 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hoxd3P09027 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hoxd3P09027 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hoxd3P09027 Gm16437-201ENSMUST00000025669 507 ntBASIC17.8■□□□□ 0.44
Hoxd3P09027 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Hoxd3P09027 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hoxd3P09027 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC17.79■□□□□ 0.44
Hoxd3P09027 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC17.79■□□□□ 0.44
Hoxd3P09027 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hoxd3P09027 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hoxd3P09027 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hoxd3P09027 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hoxd3P09027 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Hoxd3P09027 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC17.77■□□□□ 0.44
Hoxd3P09027 Gm9812-201ENSMUST00000061934 968 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms